Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq48 111 1e-19 seq593 109 4e-19 seq420 109 4e-19 seq456 82.4 6e-11 seq79 82.4 6e-11 >seq48 Length=44992 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || || |||||||||||||| ||| |||| | | | || || Sbjct 22156 ACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCG 22097 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||||||| | || | ||||||||| ||| ||| |||||||| ||||| Sbjct 22096 AGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22037 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || |||||||| || || || | || ||||| || Sbjct 22036 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTG 21977 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || ||||| ||||||||||| Sbjct 21976 CCAGTCAATGTCTTTACGAAAATTTGCAT 21948 >seq593 Length=58250 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || |||||||| || || || ||||| |||||||| || || | | | || || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| || || || | || | ||||||||| ||| |||||||||||| ||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | || ||||| || || || || ||||| ||||| ||| Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || ||||| |||||||| ||||||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCATA 28920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || || || || ||||| |||||||| ||| || | | | || || Sbjct 29586 AACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 29527 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| || || ||| | || | | |||||| ||| |||||||||||| ||||| Sbjct 29526 GAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTG 29467 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| |||| ||| | || ||||| || || || || || ||||| || || Sbjct 29466 AATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTT 29407 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || || || |||||||| ||||||||| Sbjct 29406 GCCAGTGAGGGTCTTTACAAATATTTGCATA 29376 >seq420 Length=40905 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| |||||||| || || ||||||||||||||||| || || | | | || || Sbjct 13336 AACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 13395 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||| |||||||| | || | ||||| |||||| ||| |||||||| ||||| Sbjct 13396 AAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTG 13455 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| |||| ||| | || ||||| || || || || ||||||||||| || Sbjct 13456 GATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTT 13515 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| ||||| Sbjct 13516 TCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| || || ||||||||||||||||| || || | | | || || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||| ||||| || | || | |||||||| ||| |||||| || || || || | Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| |||| || | || |||||||| || || || |||||||| || || Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || || ||||| ||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 >seq456 Length=67341 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || || || || ||||| ||||||||||| || | | |||| || Sbjct 21373 AACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTC 21432 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 ||||| || || || | ||||||||||| || ||| || ||||| || ||||| Sbjct 21433 CAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTG 21492 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| ||| ||| | || ||||| || || || || | ||| ||||| || Sbjct 21493 GATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTT 21552 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| | ||| || ||||| || ||||| || Sbjct 21553 TCCTGTTAAAGTCTTAACAAAGATCTGCATGTT 21585 >seq79 Length=127859 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/196 (69%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| ||||||||||| || | | | || || Sbjct 118830 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 118771 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| ||||| ||| | ||||||||||| || ||| || ||||| || ||||| Sbjct 118770 AATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 118711 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || ||||||||| ||||| || | ||||||||| ||| Sbjct 118710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGTAATGGTCTTA 118651 Query 15335 CCTGTCAGAGTTTTTA 15350 ||| ||||| |||| Sbjct 118650 CCT---AGAGTATTTA 118638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362117381103705