Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_004745.1 Length=30728 Score E Sequences producing significant alignments: (Bits) Value seq367 93.3 8e-15 seq8703 89.7 1e-13 >seq367 Length=135625 Score = 93.3 bits (102), Expect = 8e-15 Identities = 267/402 (66%), Gaps = 13/402 (3%) Strand=Plus/Plus Query 336 CCCGACGTTCTCCGGCTTGCCGCCCATCAACTGAAAGGGGATGCGGTGCGCGTCCAGCAG 395 |||| |||||| |||| | |||||||||||| || ||||| ||| | ||||| Sbjct 45066 CCCG-CGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAG 45124 Query 396 GTCAGCGGCGCTGGCTTTTTTGATATTaaaaaaaTCGTCCTTCGTTGCCACTTCACTGAG 455 || | |||| |||||||| || |||||||| | || || || || | Sbjct 45125 ATCGTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCAC 45184 Query 456 CGGGATAATTTTGATGCCGTCGGCTTTCC--CCTGTGGG-GCATAGAGAAACAGATTTTT 512 |||||| | | |||||||| |||| |||| || || || | |||||| || Sbjct 45185 CGGGATGAGCTGAATGCCGTC---TTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCG 45241 Query 513 AAAGTTGTTGCGGCCTTTCGACTTCACCA-TGTTTTCGCGGAGCATTTCGATATCGTTGC 571 ||||||| | |||||||| ||| || || | ||| || ||||| || | Sbjct 45242 AAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCGGT-GCGCAGTGAGTCGATGTCCTCTT 45300 Query 572 GATCCTGCACGGCATCAGTGACGTACATGATATATCCGGCATGAGCGCCGTTTTCGTAAT 631 | |||| | || || || | ||||| || | |||||||| |||||| | ||| | Sbjct 45301 CCTTCTGCGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGT 45360 Query 632 ACTTGCGGCGGAACAGCGTGGCCGACTCATTCAGCCAGGCAGAGTTAAGGGCGCTG--AG 689 ||||||| |||||||||||||| ||| || ||| || || |||||| || Sbjct 45361 ACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAGCAGTGC--GCTTTGCAGCGCTGCCAG 45418 Query 690 ATATTCCGGCAGGCCGTACAGCTCCTGATTAATATCCGGCTC 731 | |||||||||||||| | ||||| || ||||| | ||| Sbjct 45419 CCACTCCGGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTC 45460 >seq8703 Length=395 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 12378 GAAAAAGGTTTTACT-CAGTTAAGCAGTGCAACAAACAGCACCAGTGAAAAGCTGGCGGC 12436 |||||||| || | ||| | |||||||| || |||||||| || |||||||| Sbjct 203 GAAAAAGGGGATAGTACAGCTCAGCAGTGCGACCAACAGCACTTCCGAGTCACTGGCGGC 262 Query 12437 AACGCCAAAAGCGGTCAAGGCAGCAAATGACAACGCAAATTCACGTCTGGCGAAAAATCA 12496 ||||||||| || || || ||||| ||||||| ||| | ||||||| |||| | || Sbjct 263 AACGCCAAAGGCAGTAAAAGCAGCCTATGACAATGCAGAGAAACGTCTGCAGAAAGACCA 322 Query 12497 GAACGGTGCAGATATCCAGGATAA 12520 |||||| || ||||| | ||||| Sbjct 323 GAACGGCGCTGATATACCCGATAA 346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 98191667088900