Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005069.1 Length=46339 Score E Sequences producing significant alignments: (Bits) Value seq1417 100 8e-17 seq122 80.6 8e-11 >seq1417 Length=11336 Score = 100 bits (110), Expect = 8e-17 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 23717 CAAATTATGGCAGTCCAGGCGGAGCAGCTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGT 23776 || || |||| |||| ||||| ||||| |||| |||||||||| ||| | ||||||| Sbjct 4670 CAGATAATGGTGGTCCGGGCGGGGCAGCCTTCGGGCTGGCCGGTTTCCTTGAAGGCCGGT 4611 Query 23777 ATTCCTACCTCCGTTTGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGCA 23833 ||||||||| ||||| ||| ||| ||||| ||| |||||||||| |||||| ||| Sbjct 4610 ATTCCTACCCCCGTTCGGGTCACCA-CCCAT-GAGCGTAGGAACTCCGGTGGTGGCA 4556 >seq122 Length=28749 Score = 80.6 bits (88), Expect = 8e-11 Identities = 88/112 (79%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 23722 TATGGCAGTCCAGGCGGAGCAG-CTTTCGAGCTGGCCGGTATCCGTTGGGGCCGGTATTC 23780 ||||| || ||||||| |||| | || | ||||||||| |||| || |||||||||| Sbjct 14939 TATGGTAGCTCAGGCGGGGCAGGCATTAGC-CTGGCCGGTTTCCGATGACGCCGGTATTC 14881 Query 23781 CTACCTCCGTTTGGGCTGCCACCCCATAGAGTGTAGGAACTCTGGTGGTAGC 23832 ||||| |||| |||||| || ||| ||| |||||||||| |||| |||| Sbjct 14880 CTACCCCCGTCTGGGCTATCA--CCAATGAGCGTAGGAACTC-GGTGATAGC 14832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148138559070810