Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq328 93.3 5e-14 seq1098 91.5 2e-13 seq256 89.7 6e-13 seq1175 87.8 2e-12 seq9591 86.0 7e-12 seq6371 82.4 8e-11 >seq328 Length=55360 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/266 (68%), Gaps = 6/266 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || || |||||| | ||| | ||| | || | | || |||| | | Sbjct 8882 CCGTGGGTCAGGTGACCGCCGTGGGCCAGGCTCATGCCCAGGATGGTGTCGCCCGCTTGC 8941 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || || |||| || || ||| ||||| || |||| || || || ||||| ||| Sbjct 8942 AGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAGCCGGCGTGTGGCTGGACGTTGGCG 9001 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC---GATTTCATCG 7114 ||| | | |||||||| || || || || || ||||| | ||| ||| || || Sbjct 9002 TAATCGGCGCCGAACAGTTCCTTGGCGCGGTCGATGGCCAGTTGCTCAACGATGTCGACG 9061 Query 7115 GCTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTA 7174 | |||| ||||| || || || ||||||||||| || || || ||||||||||| Sbjct 9062 AACT---CGCAACCGCCGTAGTAGCGCTTGCCCGGATAGCCTTCGGCGTACTTGTTGGTC 9118 Query 7175 AAAATAGAACCCTGTGCTTTCATAAC 7200 | || ||||| || || | ||| || Sbjct 9119 AGAACCGAACCTTGAGCCTCCATCAC 9144 >seq1098 Length=31487 Score = 91.5 bits (100), Expect = 2e-13 Identities = 197/295 (67%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || |||||||| | ||| ||||| | | | | || ||||||||| Sbjct 2082 CCGTGGGTCAGGTGGCCGCCTTCGGCCAGCGACATGCCCATGATCAGGTCGCCCGGCTTC 2141 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || | || | | || ||||||| || || ||||| || | || || ||||| ||| Sbjct 2142 AGCATGGCGAAGAACACGCCCTGGTTCGCCTGCGAACCCGAGTTCGGCTGCACGTTGGCG 2201 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 | | | | ||||| | || | || || || ||||| | |||| | ||| | Sbjct 2202 CATTCGGCGCCGAACAGCTGCTTGACGCGGTCGATGGCCAGTTGCTCGGCCACGTCGACG 2261 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAA 7177 | | |||||||||| || || || ||||| ||||| || || ||||||||||| || | Sbjct 2262 TATTCGCAGCCGCCGTAGTAGCGCTTGCCTGGATAGCCTTCGGCATACTTGTTCGTCAGC 2321 Query 7178 ATAGAACCCTGTGCTTTCATAACATCGTCTGACACATAGTTTTCGGACGCAATCA 7232 || || || |||| ||| || | ||| |||||||| ||||| |||| Sbjct 2322 TGCGAGCCTTGCGCTTCCATTACGGCTGGCGACGTGTAGTTTTCCGACGCGATCA 2376 >seq256 Length=183033 Score = 89.7 bits (98), Expect = 6e-13 Identities = 180/267 (67%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 6907 GTATATCTTGCCCGAAGCATTCGCTTTGTGCCCGTGAGTGAGATGGCCGCCGCAGTCCAA 6966 ||| | ||||||||| | | ||||| ||||| || || ||||||||| | ||| Sbjct 127739 GTACAGCTTGCCCGAGGACGACACTTTGGCGCCGTGGGTCAGGTGGCCGCCGTGGGCCAG 127798 Query 6967 GGACATAGCGAGAACCGAATCACCCGGCTTCAGGAGTGCTTGGTAAACTGCCTGGTTTGC 7026 | ||| |||| | | || || | |||| || || |||| || || ||| || Sbjct 127799 GCTCATGCCGAGGATGGTGTCGCCGGCGTTCAACAGCGCCAGGTACACCGCACTGTTGGC 127858 Query 7027 TTGTGAACCGGAATGAGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACG 7086 |||||||| || || || ||||| ||| ||| | || ||||| | || ||||| Sbjct 127859 GGACGAACCGGAGTGCGGCTGCACGTTGGCGTAATCGGCACCGAACAGCTGCTTGGCACG 127918 Query 7087 CTCAATTGCCAGGTTCTCGATTTCATCGGCTTTTACGCAGCCGCCATAATACCGTTTGCC 7146 ||| || || || |||| | || | | |||||||||| || || || ||||| Sbjct 127919 CTCGATGGCGAGCACTTCGACCTTGTCCACGTGCTCGCAGCCGCCGTAGTAACGCTTGCC 127978 Query 7147 CGGATATCCCTCAGCATACTTGTTGGT 7173 ||| || || || || ||||||||||| Sbjct 127979 CGGGTAACCTTCGGCGTACTTGTTGGT 128005 >seq1175 Length=84778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 67544 TTGGTGCCGATTGTCCGACTCGAACGGACCACCTGATGCTTACAAAACAACTGCTCTACC 67603 |||||||||| || | | |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 4999 TTGGTGCCGACTGCCGGTTTCGAACTGGCCACCTGATGATTACAAATCAACTGCTCTACC 5058 Query 67604 GGATGAGCTAAATCGGCA 67621 ||||||||| |||||| Sbjct 5059 AAATGAGCTAAGTCGGCA 5076 >seq9591 Length=544 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 8/126 (6%) Strand=Plus/Plus Query 7070 AACAGTTCTTTAGCACGCTCAATTGCCAGGTTCT----CGATTTCATCGGCTTTTACGCA 7125 ||||||| ||| || ||||| || ||||| |||| |||| |||| | ||| Sbjct 7 AACAGTTTTTTGGCGCGCTCGATGGCCAG-TTCTTCCGCGAT---ATCGACAAACTGGCA 62 Query 7126 GCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACC 7185 |||||||||||| || ||||||||||| ||||| ||||| |||||||| | || || || Sbjct 63 GCCGCCATAATAGCGCTTGCCCGGATAGCCCTCGGCATATTTGTTGGTCATGATCGAGCC 122 Query 7186 CTGTGC 7191 |||||| Sbjct 123 CTGTGC 128 >seq6371 Length=1469 Score = 82.4 bits (90), Expect = 8e-11 Identities = 164/238 (69%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGC-GAGAACCGAATCACCCGGCTT 6996 ||||| ||||| || |||||| || ||||| | || ||| | | |||||||| || Sbjct 900 CCGTGCGTGAGGTGACCGCCGT-GTGCAAGGTCGAGGCCGAGCAGCTTCTCACCCGGGTT 958 Query 6997 CAGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGC 7056 || ||||| ||| || ||| || |||| || || || || |||||||| || Sbjct 959 CATCAGTGCCATCAGAACAGCAGCGTTGGCCTGTGCGCCCGAGTGCGGCTGAACGTTCGC 1018 Query 7057 GAAAT-TGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGG 7115 ||| | |||| | || ||||| || ||||| | ||||| | |||||| | ||| Sbjct 1019 GAACTCTGCACCGAAG-AGTTCCTTCGCACGGTTGCGCGCCAGATCCTCGATGACGTCGA 1077 Query 7116 CTTTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 | | |||| ||||| || || || ||||| || ||||| || ||||||||||| Sbjct 1078 CGTGCTCGCAACCGCCGTAGTAACGACGTCCCGGGTAGCCCTCGGCGTACTTGTTGGT 1135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555265976729800