Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq98 150 2e-31 seq689 91.5 1e-13 >seq98 Length=772300 Score = 150 bits (166), Expect = 2e-31 Identities = 478/734 (65%), Gaps = 14/734 (2%) Strand=Plus/Plus Query 12858 TTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATAT 12917 |||||||||| || | || | ||| ||||| || || ||||| |||| | || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 12918 TTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT-TACACCCTAATTCTAGT 12976 | ||||||||||| || ||||| | | | ||| |||||| || | || | ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATA-TATTTTGGTATAACCCAGTTCCTGC 410218 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 | | ||||||| ||||||||||| || |||||| ||| | | ||||| || || Sbjct 410219 AGCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATC 410278 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 | || |||| || ||||| | ||| | ||||| || || || || ||| | Sbjct 410279 AGGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATA 410338 Query 13097 ATGTCTCTTATTACGTTCT--CTAATGGAGGATTTGATAGATGCTTAAACATCATACATG 13154 || | | || | || || | | |||| || ||| | | || || | Sbjct 410339 ATTCCATGAACGACTTCCTGGCTCA--GTTTATTTTTGAGCATTTTATAAAGCAGGCAGG 410396 Query 13155 CAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCG 13214 |||| ||||| |||| || |||||||| || | ||| || ||| ||||| || | Sbjct 410397 CAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTG 410456 Query 13215 GCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaa-aaTATT 13273 |||| || |||| |||||| | ||| || || | | || | | |||| || || || Sbjct 410457 GCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATG 410515 Query 13274 CCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC 13333 ||||| ||||| || || || | ||| | ||| || | |||| | ||| ||| Sbjct 410516 CCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAA------ATTTCCGCCCTCAATC 410569 Query 13334 CACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 || ||||| | |||||||| || || || | | |||| || | || Sbjct 410570 CAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAAC 410629 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 | | |||||| | | ||| |||||| ||||| |||| | ||| |||| Sbjct 410630 AGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCA 410689 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || || ||||||||| || ||||| ||||||||||| | || || | | ||| Sbjct 410690 GAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGT 410749 Query 13514 ACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaa 13573 |||||| || | |||| | |||||| || || || |||||||| ||||||||| Sbjct 410750 ACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAA 410809 Query 13574 aaaGCAAGTATGTG 13587 ||||||||||| || Sbjct 410810 AAAGCAAGTATATG 410823 >seq689 Length=46727 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 13442 CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCC 13501 ||||| | |||||||||||||| || || || |||||||||||||| ||||| | |||| Sbjct 17920 CTATAGGTCTCTGAATGAATATTCTCAATGGCAATTTGGAAACCATAGAAACAACGAGCC 17861 Query 13502 TCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCA 13561 |||| | || || || | || | | || ||||| ||||| || || || ||| Sbjct 17860 TCTGGGATTTGGACCTCTGCCATGAAACGTGTAGCCAAGTTCTCGTTTACAATACCATCA 17801 Query 13562 CTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAA 13596 |||||| ||||| ||||| || || | ||||| Sbjct 17800 GAAGCAGCGAAAAAGGCAAGGATATGAGTGATAAA 17766 Score = 86.0 bits (94), Expect = 5e-12 Identities = 114/155 (74%), Gaps = 4/155 (3%) Strand=Plus/Minus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| ||||| || |||||||| ||||| || | || || | |||||| ||||| || Sbjct 18319 CAGACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGT 18260 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAG--CAGCAAACGAACCCGaa 13264 | ||| ||||| | || || || || | |||||| || | ||| |||| | || || Sbjct 18259 CAAACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAG-AAACTA-CCAGAG 18202 Query 13265 aaaaaTATTCCTTCAACTGCTGCAAACGCTATCAA 13299 ||||| || || || || ||||||||||| | ||| Sbjct 18201 AAAAAGATACCCTCGACGGCTGCAAACGCCACCAA 18167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430908837365010