Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq593 140 7e-28 seq420 125 2e-23 seq48 125 2e-23 seq1623 122 2e-22 seq355 107 4e-18 seq689 91.5 3e-13 >seq593 Length=58250 Score = 140 bits (154), Expect = 7e-28 Identities = 185/254 (73%), Gaps = 7/254 (3%) Strand=Plus/Minus Query 104309 GAGTCTTTCCATACTTTATTTATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGAT 104368 |||||||| || | || | || || || | ||| | ||| || | ||| | |||||| Sbjct 29626 GAGTCTTTACAAAGATT-TGCATACCTCCACGTAGACGAAGAACCAAATGGAGAGTAGAT 29568 Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || ||||| || || || | || || || ||||| ||||| || ||| Sbjct 29567 TCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAA 29508 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || || |||||||| || || |||||||| || || |||||||| | || ||||| Sbjct 29507 ATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTG 29448 Query 104489 TCTACGGTATCGCTAGGT---TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTT 104545 || | ||| || || | || || || | ||||||||||| ||||| || || ||| Sbjct 29447 TCGATGGTGTC---AGATCCCTCGACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTT 29391 Query 104546 ACAAATATCTGCAT 104559 |||||||| ||||| Sbjct 29390 ACAAATATTTGCAT 29377 Score = 127 bits (140), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 ||||| | ||| | ||||| || || ||||| || |||||||| || || | || || Sbjct 29132 AGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 29073 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || ||||| ||||| ||||| || || | |||||||| || || |||||||| || || Sbjct 29072 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCT 29013 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT---TCTACCTCTAGTGTAATA 104524 || ||||| | ||||| || || | ||| || || | || ||||| | || || Sbjct 29012 TGGATCTTGGTCTTTACGTTATCGATGGTGTC---AGATCCCTCAACCTCCAAGGTGATG 28956 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||||||||| || |||||||| || ||||| Sbjct 28955 GTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || ||||| || ||||| || ||||| | ||| || || ||||| ||||| Sbjct 29801 GTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCG 29742 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||| || || ||||| || || ||||| ||||| | || Sbjct 29741 GCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTG 29682 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || || ||||| | ||||||||||| |||||||| || Sbjct 29681 ACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTC 29622 Query 104543 TTTACAAATATCTGCAT 104559 |||||||| || ||||| Sbjct 29621 TTTACAAAGATTTGCAT 29605 >seq420 Length=40905 Score = 125 bits (138), Expect = 2e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||| | || | || || || || ||||| || ||||| Sbjct 14000 ATTCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCG 14059 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||||| |||||||| ||||||||||| || || || |||||||| || Sbjct 14060 GAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGT 14119 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || ||||| | || || || || | ||| || || Sbjct 14120 GGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCG 14179 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| ||||| || ||||| ||||| | ||| || ||||| || |||||| || Sbjct 14180 ACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATTATG 14233 Score = 116 bits (128), Expect = 9e-21 Identities = 167/234 (71%), Gaps = 6/234 (3%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||||| | || | ||||| ||||| || || || |||||| Sbjct 13544 ATTCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCA 13603 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || ||||| || || ||||| || || | |||||||| || Sbjct 13604 GAGAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGT 13663 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT--- 104506 || || || || ||||| |||||||| | || || || || | |||||| || | Sbjct 13664 GGAATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTGTCGATGGTATC---AGATCCC 13720 Query 104507 TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| | ||||||||||| ||||| || || || || || ||||||||| Sbjct 13721 TCAACCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 13774 >seq48 Length=44992 Score = 125 bits (138), Expect = 2e-23 Identities = 149/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || |||||||| || || | || || || || || || ||| Sbjct 22828 GTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 22769 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | |||||||| || || |||||||| || || |||||||| | || Sbjct 22768 GCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTG 22709 Query 104483 ACATTTTCTACGGTATCGCTAGGT---TCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || || || | |||||| || | || ||||| | ||||||||||| ||||| || Sbjct 22708 ACGTTGTCGATGGTATC---AGATCCCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGA 22652 Query 104540 GTTTTTACAAATATCTGCATT 104560 || ||||| || ||||||||| Sbjct 22651 GTCTTTACGAAAATCTGCATT 22631 >seq1623 Length=5066 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || || || || ||||| || ||||| | ||| || || ||||| ||||| Sbjct 132 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTCAAGTTGCTTTCCG 191 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | |||||||| || || |||||||| || || || ||||| | ||| Sbjct 192 GCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTT 251 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || ||||| | || || ||||||||||| || ||| Sbjct 252 ACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTTACCAGTCAGGGTT 311 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 312 TTAACAAAGATTTGCAT 328 >seq355 Length=81473 Score = 107 bits (118), Expect = 4e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 104378 ATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTC 104437 || || ||||| || ||||| | ||| || || ||||| ||||| ||||| || || | Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 104438 TGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTA 104497 || ||||| || || |||||||| || || || ||||| | || || || || | || Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTG 81354 Query 104498 TCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGC 104557 || ||| ||||||||||| || ||||| ||||| | ||| |||||||| || ||| Sbjct 81353 TCAGATCCTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTGC 81294 Query 104558 AT 104559 || Sbjct 81293 AT 81292 >seq689 Length=46727 Score = 91.5 bits (100), Expect = 3e-13 Identities = 200/297 (67%), Gaps = 12/297 (4%) Strand=Plus/Plus Query 268994 AGTCTATTAATAGATACTTATATAGATGATAACAA-CGAAAAGAAAAGACTATTTTCTTC 269052 ||| ||||||| ||||| ||||| ||| || | | |||||| | | ||| ||| Sbjct 18026 AGTTTATTAATCGATACATATAT------TAAGAATCCAGTTGAAAAGGCCAATTTGTTC 18079 Query 269053 TATG----AGA-ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATA 269107 ||| ||| ||||| ||||| | || || |||| ||||| ||| |||||| Sbjct 18080 AATGCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGATGGATC 18139 Query 269108 AACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTC 269167 || | | | | | || | || || || ||||| || || || ||||| || Sbjct 18140 TCAAATTCCAAGTCGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTT 18199 Query 269168 TTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTA 269227 || || || ||| | ||||||||| | ||||| | || | |||||||| || Sbjct 18200 TTCTCTGGTAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTG 18259 Query 269228 ACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 || || || ||||| ||||| ||| | ||||||||||| ||||||||||| || ||| Sbjct 18260 ACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCCTGT 18316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151191794150540