Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005340.1 Length=30636 Score E Sequences producing significant alignments: (Bits) Value seq367 134 3e-27 >seq367 Length=135625 Score = 134 bits (148), Expect = 3e-27 Identities = 241/345 (70%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 433 AAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTTATGCCGTCCGGTTTCCCG 492 || || ||||| | || |||||||||| || | || | |||||||| || || Sbjct 45156 AATTCGTCCTTGGCCGCAACCTCGCTCACCGGGATGAGCTGAATGCCGTCTTTCTTGCCT 45215 Query 493 TTCGGTGAGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTAGAATTACGCATTGCA 552 ||| | ||| | ||||||||| ||||||||| ||||||| || || || ||| Sbjct 45216 GCCGGCGCGTACACAAACAGGTTGCGAAAGTTGCCTGGCCCTTTCGAGTTCTTCAGTGCG 45275 Query 553 TCGCGCAGCGATTCGACGTCAGTCGCGCTT-TGCGCCGGGTCAGTCACATACATGATGTA 611 |||||| || |||| ||| || ||| ||||||| ||| |||| |||| ||| | Sbjct 45276 GTGCGCAGTGAGTCGATGTCC-TCTTCCTTCTGCGCCGCGTCGGTCATGTACAGAATGAA 45334 Query 612 ACCTGCGTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAG 671 ||| || || |||||| | ||| |||||||| ||||||||||| ||| || || || Sbjct 45335 ACCGGCATGGCTGCCGTTGTTGTAGTACTTGCGCCGGAACAGCGTGGCGCTCTCGTTGAG 45394 Query 672 CCACGCAGAATTAAGC-GCGCTG--AGATATTCAGGCAGGCCGTAAATCTCCTGATTAAT 728 | || | || || |||||| || | || ||||||||||| || ||||| || || Sbjct 45395 CAGTGC-GCTTT--GCAGCGCTGCCAGCCACTCCGGCAGGCCGTAGATTTCCTGGTTGAT 45451 Query 729 ATCAGGCTCCAGCAGGTGGAACACGGTATCGGGTGCGAACTCATG 773 ||| | ||| ||| |||| | | | | |||| || || ||||| Sbjct 45452 ATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGGGCAAATTCATG 45496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97897316050380