Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq24 176 1e-39 seq585 141 2e-29 seq1910 125 2e-24 seq816 122 2e-23 seq1130 105 2e-18 seq208 105 2e-18 seq215 102 2e-17 seq1321 95.1 3e-15 seq1320 91.5 4e-14 >seq24 Length=857 Score = 176 bits (194), Expect = 1e-39 Identities = 202/271 (75%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 37243 ATGAGCAGAGTCACCGCAATTATCTCCGCTCTGGTTATTTGCATCATCGTCTGCCTGTCA 37302 |||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 37303 TGGGCTGTTAATCATTACCGTGATAATGCAATCGCCTACAAAGAGCAGCGCGATAAA--- 37359 |||||||||||||||||||||||||| || || ||||||||| |||||||| ||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 37360 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGGCAACATGAT 37401 |||| | | | | || |||| ||||||| ||| || | |||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 37402 GTAGCAGAACTTGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 37460 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 37461 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 37491 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq585 Length=21099 Score = 141 bits (156), Expect = 2e-29 Identities = 337/499 (68%), Gaps = 14/499 (3%) Strand=Plus/Plus Query 33053 GGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCAG 33112 |||| |||||| | |||||||| | |||||||||||||||||| ||||||||||||||| Sbjct 20183 GGCACCCATTCTGTTTTCAGACTGCGGAAGAAGCGTTCCATTGGACTGTTATCCCAGCAG 20242 Query 33113 TTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTGC 33172 ||||| || ||||| | ||| || | ||| ||| ||||| | | || | | | | Sbjct 20243 TTTCCCCGTCGGCTGACACTTTGCTTTATCCTGTAACGCCAGAGAAGTTGTTGATATTTC 20302 Query 33173 CTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCAC--CCCGCCGGGCTTACCAC 33230 | ||||| ||||| ||||| ||||| |||||||| || ||||| |||| ||||| Sbjct 20303 AGTCCTGTATATTGACTTCCCTGGTCGCTATGGAACATGACGTCCCGC--GGCTGACCAC 20360 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGT-CCGGCGAGAAC-GA 33288 | || | ||||| ||| || | | | || || || |||| | || Sbjct 20361 GCACCTCATACGCCATCCGCAGGGCACTGCTTATCAG--GGCAGTATCGGCATTCGCTGA 20418 Query 33289 CATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCA 33348 || | |||||| | | | || || || || | || || || || || ||| Sbjct 20419 CAGGCTCCAGCCGATAACCCTGCGGGCAAAAAGATCCATGACGACCGCCAGATAGCACCA 20478 Query 33349 GCGCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCAC 33408 ||| || || | ||||||||| || | ||| |||||||| ||| || |||||||| ||| Sbjct 20479 GCGATTTCCTGCCCAGATATACGTAATATCTCCGCACCATACCCTATCTGGCTCGGGCAC 20538 Query 33409 GGCGAACTGCCTTTCAAGGTAGTTAGGGATAGCA-ACATGTTCATGACCACCACGTTTAT 33467 |||||||| | |||| | || | || ||| |||||| |||| | || ||| | Sbjct 20539 AGCGAACTGGCGCTCAA-GCAGATTCGGCAGGCAGGTATGTTCCTGACGAGCATTTTTGT 20597 Query 33468 ACCGGTGAGT--CGGCTGCTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGC 33525 || | || | ||| ||||||| ||| ||| ||| | |||||| || | || || Sbjct 20598 ACTGATGTTTTCCGG--GCTGACAACTGCTCAGGTTCAGATATTTCATCAGACGCCCGGC 20655 Query 33526 AAGCCAGCGTCCCATCTGG 33544 | | | || | |||| || Sbjct 20656 ACGGTAACGGCTCATCGGG 20674 >seq1910 Length=22743 Score = 125 bits (138), Expect = 2e-24 Identities = 249/366 (68%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 33052 CGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCTGTTATCCCAGCA 33111 ||||| ||| || | || | || | ||| | |||||||| ||| ||| ||||| || Sbjct 10396 CGGCAGCCACTCCGTTTTGAAGCTGCGGAACAGCCGTTCCATCGGGGCGTTGTCCCAACA 10455 Query 33112 GTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAACTGCCGGAACTG 33171 ||||| || ||||||||||| |||| ||| | || ||||||||| ||| ||||| | Sbjct 10456 ATTTCCCCGACGGCTCATACTTTGTCGTATCCGATAGCGCCACAATCGCTGACGGAATTT 10515 Query 33172 CCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCA-CCCCGCCGGGCTTACCAC 33230 | ||| | || ||||| || ||||| || |||| || |||| ||| | ||| | Sbjct 10516 TCGGCTGGCGTACTGACTACCTTGATCCGAATGAAACAGCAGCCCCTGCGGTC-GACCGC 10574 Query 33231 GGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCGGCGAGAACGACA 33290 | || | |||||||||||||||| || || | ||| ||| | ||| | Sbjct 10575 GCTGCTCAAAGGCCATTTCCAGCGCTTGCACAACAAGGTCGGCGTCGGGCCGTAGCGAGA 10634 Query 33291 TGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAGC 33350 ||||||||||| | | | |||||||| || | || || || | ||| ||| | Sbjct 10635 ATGCCCAGCCCACCGCTCGGCGAGCGAACAGATCCAACACCACAGCCAAGTAGTACCATC 10694 Query 33351 GCTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATTTGGCTCGGTCACGG 33410 || || ||| | |||||| | ||| |||||||| || ||||||||| | ||| | Sbjct 10695 GCCCCTGCGCCCAAACATAGGTGATATCGCCGCACCAGACGTGATTTGGCGCCTCCACCG 10754 Query 33411 CGAACT 33416 ||||| Sbjct 10755 TGAACT 10760 >seq816 Length=14434 Score = 122 bits (134), Expect = 2e-23 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 18426 CAGGCAATAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 18485 || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11445 CACGCAAGAAAAAACCGCCATCAGGCGGCTTGGTGTTCTTTCAGTTCTTCAATTCGAATA 11386 Query 18486 TTGGTTACGTCT 18497 |||||||||||| Sbjct 11385 TTGGTTACGTCT 11374 Score = 122 bits (134), Expect = 2e-23 Identities = 73/77 (95%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 16788 ACCTTCTCATCAAGCCAATCCGCCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 16847 || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 13106 ACTTTTTCATCAAGCCAATCCGTCCACCACTGCATCATTTCTCTGCGCTTATCGAGATAC 13047 Query 16848 TGAGCATGGTTGTAAAT 16864 ||||| ||||||||||| Sbjct 13046 TGAGCGTGGTTGTAAAT 13030 Score = 96.9 bits (106), Expect = 9e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 18798 ATCATCTCCATAAAATAAAACTCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAAT 18857 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| || | | Sbjct 11255 ATCATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGT 11196 Query 18858 GCGAGGAT 18865 |||||||| Sbjct 11195 GCGAGGAT 11188 >seq1130 Length=54118 Score = 105 bits (116), Expect = 2e-18 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 38319 TGCTCACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCT 38378 |||| ||||| ||||| ||| | ||| || |||||||| || ||||| ||||| |||| Sbjct 31178 TGCTGACTTTTTGCGTGCTGATTCTGCGCAACGGCTTCACGGTGACCGGCGAGAGCGCCT 31237 Query 38379 GTGCAAGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCGGCAAAATGCTG 38438 | || || ||||||||||| ||||| ||||| |||||||| | || || ||||| | Sbjct 31238 GCGCCAGTCCGGAAAACTTCGATGCCGAAATCGGCCGGAAAGTCGCGCGTGCGAATGCGG 31297 Query 38439 TAAACAAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAGAAGC 38483 | | ||||||||| || ||||| || |||||| ||||| Sbjct 31298 AACAGAAAATCTGGCAACTGGAAGGCTATCGCCTGAAG--GAAGC 31340 >seq208 Length=140336 Score = 105 bits (116), Expect = 2e-18 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 33040 GTAACCCACCACCGGCATCCATTCGTTCTTCAGACTCCTGAAGAAGCGTTCCATTGGGCT 33099 |||||| | | || ||||| || ||||| || | || | ||| ||||| || Sbjct 12781 GTAACCAGTCGCTGGAATCCACTCTGATTTCAGGCTGCGAAACAGGCGCTCCATCGGCGA 12840 Query 33100 GTTATCCCAGCAGTTTCCGCGCCGGCTCATACTCTGTCTGATCTGGTATCGCCACAATAA 33159 ||||||||||||||| || || || ||||| |||||| |||| |||| ||||| | Sbjct 12841 GTTATCCCAGCAGTTCCCCCGGCGACTCATGCTCTGTTCGATCCGGTAACGCCATAGCCG 12900 Query 33160 CTGCCGGAACTGCCTGCTCGTATAATGACTGCCCTGATCGCTGTGGAACATCACCCCGCC 33219 |||||||||| | | ||| || || || |||||||||||| || ||| || || || Sbjct 12901 CTGCCGGAACAGGCGGCTGGTGTACTGGCTGCCCTGATCGGAATGAAACCGCA-CCTGCT 12959 Query 33220 G-GGCTTACCACGGGTTTCCCATGCCATTTCCAGCGCTTTCATGGTGAGCCTGCTGTCCG 33278 | ||||| || || || | ||||| || || || || || ||| | |||| Sbjct 12960 GTGGCTTGCCGCGCTGCTCGTAGGCCATGTCGAGGGCCTTGATCACCAGCGCGGCATCCG 13019 Query 33279 GCGAGAACGACATGGCCCAGCCCACTGGTTTTCTTGCGAACAGGTCGAGAACAACGGCGA 33338 || || | |||||||| | | | | | |||| || || || ||||| | Sbjct 13020 GCTTTGTGGAAAGCGCCCAGCCAATCGTCCGCCGGGTGTACAGATCCAGCACCACGGCCA 13079 Query 33339 GGTACGCCCAGCG--CTTACCCGTCCAGATATAGGTCACATCACCGCACCACACCTGATT 33396 |||| |||||| ||| || |||||| ||||| | ||| |||||||| ||| | || Sbjct 13080 GGTAATGCCAGCGACCTT--GCGCCCAGATGTAGGTGATATCGCCGCACCAAACCCGGTT 13137 Query 33397 TGG 33399 || Sbjct 13138 CGG 13140 >seq215 Length=48791 Score = 102 bits (112), Expect = 2e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 38324 ACTTTCTGCGTACTGGTGCTGAAGAATGGCTTCACCGTCACCGGAGAGAGTGCCTGTGCA 38383 || ||||| || ||||| ||| || || |||||||||||||| ||||| || || || Sbjct 17422 ACCTTCTGTGTCCTGGTCCTGCGCAACGGTTTCACCGTCACCGGTGAGAGCGCATGCGCC 17481 Query 38384 AGCCCGGAAAACTTTGATGCAGAAATTGGCCGGAAGATTGCCCGGCAAAATGCTGTAAAC 38443 || ||||| ||||| || || ||| | ||||| ||||||||||| || || || | | | Sbjct 17482 AGTCCGGAGAACTTCGACGCCGAAGTGGGCCGCAAGATTGCCCGCCAGAACGCCGAACAG 17541 Query 38444 AAAATCTGGATGCTCGAAGGTTACTTGCTGAAGCAG 38479 || |||||| ||| || ||| ||| |||||| Sbjct 17542 AAGATCTGGCCGCTGATGGGCTACGCGCTCAAGCAG 17577 >seq1321 Length=3862 Score = 95.1 bits (104), Expect = 3e-15 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 21675 TAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATT 21734 || |||| | ||| || ||||||||||| | || | ||| || || || ||| || Sbjct 2824 TAGACCTGCGCGCCCTTGCGCAGATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGC 2765 Query 21735 ACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGT 21794 |||||||||||||| |||||||||||| ||| || || || || |||||||| | Sbjct 2764 ACCACGCGGTGCCATTCCGTCTGCTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTT 2705 Query 21795 TCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATATCTGATTTC 21853 ||||| || || || |||||||| | || || || | ||| || || | || ||| Sbjct 2704 TCTGATGTGGCCACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTAACGGACTTC 2646 Query 21854 TGGATCATGCCCAAGGCGACCAATAATGATCACCTTATT 21892 ||||||| || || || || | | ||| ||||| || Sbjct 2645 CGGATCATTGCCCAGACGCCCGACGAGGATGACCTTGTT 2607 >seq1320 Length=7270 Score = 91.5 bits (100), Expect = 4e-14 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 21666 CCTTCAAGATAAACCTCAGAGCCTTTTCGCAGATATTCGCTGGCAATTTCTGCCAGTTTC 21725 ||||| | || |||| | ||| || ||||||||||||| || | ||| || || || Sbjct 6217 CCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAGCCACTTCCGCGAGCTTG 6158 Query 21726 CCGCTCATTACCACGCGGTGCCACTCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCA 21785 ||| || |||||||| ||||| || ||||||||| ||| || || || || ||| Sbjct 6157 CCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCTCCCCTGTCTGTTTGTCA 6098 Query 21786 CGCCATTGTTCTGACGTAGCAACTGTAAGGTTTGCAAATGCCGTTCCTGATGGTGA-ATA 21844 ||||| ||| ||||| || || |||||||| | || || || | ||| || || Sbjct 6097 CGCCAGGTTTCCGACGTGGCGACCTGCAGGTTTGCCACTG-CGCCCCCGTTGGGGATGTA 6039 Query 21845 TCTGATTTCTGGATCATGCCCAAGGCGACCAATAATGATCACCTTATTTACGCC 21898 | || ||| ||||| | || ||||| || | | || ||||| || | ||| Sbjct 6038 ACGGACTTCCGGATCTTTTCCCAGGCGTCCTACGAGAATGACCTTGTTAATGCC 5985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124795241929050