Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq400 324 4e-84 >seq400 Length=38681 Score = 324 bits (358), Expect = 4e-84 Identities = 467/656 (71%), Gaps = 2/656 (0%) Strand=Plus/Minus Query 18968 AGTTCGGACACGTCCACATTGGCGATGCGGACGACGTAACGCCAGTCGCGCAGGGTCAGG 19027 || ||| ||| || | ||||||||||| || ||||| |||||||| ||||| | ||| Sbjct 14001 AGATCGCTCACATCGATGTTGGCGATGCGCACAACGTAGCGCCAGTCACGCAGTGCCAGA 13942 Query 19028 CCGATGTCCCACTTGTAGTGGGTGCGGTAGCCCTGGTAGCGGCCGCCGGCGGCGTCGATC 19087 ||| | ||||| ||||| ||||| || ||||||||||| || || ||| |||| | Sbjct 13941 CCGTTATCCCATTTGTAATGGGTACGATAGCCCTGGTATTTACCACCACTGGCATCGACC 13882 Query 19088 AGCGTGTCCTCGCCGAGGTCACGCGATTGCAGGCCGGCCTGCGAACCCTTCGGGTAGATG 19147 || || | ||| || |||| | | || ||||| || | | || |||||| ||||| Sbjct 13881 AGGGTTTGCTCACCAAGGTTCTGAGTCTGTAGGCCAGCTTTCTGCCCTTTCGGGAAGATG 13822 Query 19148 GTATGCAGGGTGTTCGGCCCCCACACCGTCAGCCAGATGGATGCGTTGTCGCTGCCCGTG 19207 ||| | |||||| ||||| ||| ||||||||| || | ||| || |||| || Sbjct 13821 CCATGAACGGTGTTTTCACCCCATACCACCAGCCAGATAGAGGTGTTATCAGTGCCGGTA 13762 Query 19208 CCGCCGGCGTCGATGATGTTCTGGCCGTTCTCCGCGGACAGGCTGTTGAAGCGCGGCGTC 19267 ||||| |||||||| |||||||||||||| | || ||| |||| | | || | | | Sbjct 13761 CCGCCAGCGTCGATAATGTTCTGGCCGTTACCTGCAGACTTGCTGGAGTAACGGGATGAC 13702 Query 19268 AGGCCCATGAACTTCTCGGCGTCGATGCTGGAATCGCCGTAGAACAGCGTGGTCGCCTGG 19327 ||||||||||| | || | || | |||| |||||||||||||||||| ||| Sbjct 13701 AGGCCCATGAATTGCTGTGGGTTCACACTGGTATCGCCGTAGAACAGCGTCTGAGCCATC 13642 Query 19328 GTCTGGTTCATGCCTTCGATGAAGGCGCGGTCTTCGGACAGGCGCCAGGCGGCGGAATTG 19387 ||||||||| ||||||||||| || |||||||| ||||| || | | || | |||| Sbjct 13641 TGCTGGTTCATACCTTCGATGAATGCACGGTCTTCCGACAGACGGAATTCAGCAGTATTG 13582 Query 19388 CCGTTGAGGTCGGCCAGGGCCTTGTCCACTTCGGCGTAGGTTTCCAGCATCCCCATGCTG 19447 ||||| || || ||||| | ||| || || || || ||||||||||||||||| | | Sbjct 13581 CCGTTCAGATCAGCCAGAGACTTATCAACCTCAGCATAGGTTTCCAGCATCCCGCAGGAG 13522 Query 19448 TCCTTGACCTGCACGGTGCGGGACTTCTCGGGCTGCACGCCATAGTTCAGCTTGCGCCAG 19507 || | ||||| |||||| || || |||||||| || ||||||||| |||||| Sbjct 13521 TCTGTAACCTGTACGGTGGTTGATTTGCTTGGCTGCACACCGTAGTTCAGCAAGCGCCAT 13462 Query 19508 GTGCCGGTGGGCAGGCCGCTGCGAACCGTGGTCTTGTGCTCGGTGAAACCGTTGGCCTCG 19567 || | | |||| || || || ||||| |||| | || |||| |||| Sbjct 13461 GTCGCAGATGGCAAACCAGATCGCACAGTGGTGCGGTGCCCTGTTGGCAGGTTGCCCTCT 13402 Query 19568 ATGACGGTCATGT-CGTCGAGGATTTCGTTGGTTTCGTTCAGCATTTCGACGATCT 19622 | || |||||| |||| ||||||||||| || | | || | |||||| |||| Sbjct 13401 ACGAACATCATGTCCGTC-AGGATTTCGTTTGTCTGGGAAAGGAGTTCGACAATCT 13347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135833405873550