Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005841.1 Length=41391 Score E Sequences producing significant alignments: (Bits) Value seq24 910 0.0 seq816 601 9e-168 seq1130 93.3 1e-14 seq2164 86.0 2e-12 >seq24 Length=857 Score = 910 bits (1008), Expect = 0.0 Identities = 623/702 (89%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21482 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21541 ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 21542 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATG 21601 ||||||||||||| |||| |||||| || || | || ||||| | |||||| ||| | | Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 21602 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 21661 | || || |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 21662 TCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATA 21721 ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 21722 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATT 21781 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 21782 TCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATC 21841 |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 21842 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTG 21901 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 21902 AGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTC 21961 || |||||||||| |||||||||||||| |||||||| |||| ||||| |||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 496 Query 21962 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAA 22021 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 497 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 556 Query 22022 CGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGC 22081 |||||| |||||||||| ||||||||||| | | | | ||| |||||||||||| Sbjct 557 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 616 Query 22082 GACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACAC 22141 | ||||||| || ||||| | ||||||||||||||| || | ||| || | | |||||| Sbjct 617 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 676 Query 22142 AAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCG 22183 |||||| | ||| ||||||||||||| ||||||||||| || Sbjct 677 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq816 Length=14434 Score = 601 bits (666), Expect = 9e-168 Identities = 738/999 (74%), Gaps = 9/999 (1%) Strand=Plus/Minus Query 13483 GCTGGCTAACCGTGCTTCCTATAGGTCTGCGGCATGCTTCCAATTACCTTTCCAAAGACA 13542 |||| || ||||| |||||||| ||||||||||| || ||||| ||||| || || | Sbjct 5856 GCTGATTATCCGTGTTTCCTATACGTCTGCGGCATACTGCCAATAACCTTCCCGAAAATG 5797 Query 13543 AAAACCCTATTCATTTCATCTCTTTCAATTGGGTCCCAAGCTGAATAACTCTTATTATCA 13602 || |||| ||||| || ||| | || || |||||||| | ||| || ||||| |||||| Sbjct 5796 AACACCCGGTTCATCTCGTCTTTCTCGATCGGGTCCCACGGTGAGTAGCTCTTGTTATCA 5737 Query 13603 GATATGACCAATAGTTTATCTTTCATCTTCTGGAGCCGCTTAACATGTGCAGTATCGTCA 13662 || || |||| ||| |||||||||||| | || || ||||| ||||| || || ||||| Sbjct 5736 GAGATAACCAGTAGCTTATCTTTCATCATTTGCAGGCGCTTTACATGGGCTGTGTCGTCG 5677 Query 13663 TAGAGGAAGGCGTATATCCCATCCCCATCGAAGTTTTTGATGCTTACGTCTACAAACAAC 13722 || || || || || || ||||| || ||||| ||| | | | || || |||| | Sbjct 5676 TACAGAAACGCATAGATACCATCACCGTCGAAAGATTTAACCGTGATATCAACGAACAGC 5617 Query 13723 AGATCTCCTGGTTCAATAGTTCCTGACATGCTATCTCCGCGCACATTTATGATGCGGATA 13782 ||||| |||||||| || |||||||||||||| || |||||||| || |||||||||||| Sbjct 5616 AGATCACCTGGTTCGATCGTTCCTGACATGCTGTCACCGCGCACGTTAATGATGCGGATA 5557 Query 13783 TTTTCAGCCTTTCTACCATCGAACATGTGTCTGGCATCGTCCTGCGAATACTCAACCGAG 13842 ||||| ||||| || |||||||||||||| | |||||||| ||| |||||||||||| Sbjct 5556 TTTTCCGCCTTCCTGCCATCGAACATGTGACGAGCATCGTCAAACGAGTACTCAACCGAG 5497 Query 13843 CGGAGTATTTCCACGAATTCTCGATTGATAACGCCAGGACCCGCGCTAACTTCAAGATCT 13902 || || | |||||| || || || ||||| || || || || || || ||||| | ||| Sbjct 5496 CGTAGAACTTCCACAAACTCACGGTTGATGACACCCGGTCCGGCACTGACTTCTATATCA 5437 Query 13903 AGGATATCGATTTTAAATGTGTTTGAA--GATG-GAGATGCGTTTATCGGAGTAGTT--C 13957 || | || || || || |||||| | || || | | || | || | ||| | Sbjct 5436 AGAACGTCAATCTTGAAGTATTTTGAATGGCTGACAGCAG-GCTTCCCTGA-TTGTTGAC 5379 Query 13958 CATCTTTTTTCATAGGACCAATTCCGGTAGACAACCATTCCGAATTAACACCTAACGCGT 14017 | || ||| |||| || || || || | || | |||||| | |||||| || || | Sbjct 5378 CGTCATTTCTCATCGGGCCTATGCCTGATGAGAGCCATTCTGTTCGAACACCCAATGCAT 5319 Query 14018 TTGCTATTTCAACAATCTTTGTTGACCCACGAGCGTTTCCACTTGTCAAACGCCAGATCG 14077 | |||||||||||||| |||||||| || || ||||| || ||||||| | |||||| | Sbjct 5318 TAGCTATTTCAACAATTTTTGTTGAGCCGCGCGCGTTGCCGCTTGTCAGTCTCCAGATTG 5259 Query 14078 TTGGCTGAGCAACGCCTGACGCTTTAGCGAGAGCACCTTGAGACATACCAGCCAGTTCCA 14137 | || ||||| ||||| ||||| || || ||||| ||||||||||| |||| |||||| Sbjct 5258 TGGGTTGAGCTACGCCAGACGCCTTTGCAAGAGCGCCTTGAGACATTCCAGATTGTTCCA 5199 Query 14138 TTGCCTTGTTGAGACGGTCAGAGAGAGTTTCTTTTTTCATAATATTCAATTTATACGCTT 14197 | || ||| | || |||| ||||||||||||||||||| || ||||||||||||| Sbjct 5198 TCGCTAGGTTTAAGCGATCAGCAAGAGTTTCTTTTTTCATAAGTTTTAATTTATACGCTT 5139 Query 14198 GCGTATTAATGGTCAAAACACGTTTTGCTATTGCTTTGATTAATACTCATTGCTATTATT 14257 ||||||| |||||||||||||||||||||||||||| | ||||||| ||||||||||||| Sbjct 5138 GCGTATTGATGGTCAAAACACGTTTTGCTATTGCTTGGGTTAATACGCATTGCTATTATT 5079 Query 14258 TGTTGTGTGTTATACGAAAGGGAATAAGCAATGACTAACAAAGCAATACAAAAAGCTGTT 14317 || || |||| || ||||| |||||| || || | || ||| || | Sbjct 5078 CATTCATTGCAATACCAATAGGAATTGATAATGACAAATCAAACCATTCAACTCGCAATC 5019 Query 14318 GCCATTGCAGGAAGCCAGCAAAAACTCGCCTCTTTGTGTGGAGTTAAGCAGCCAACTGTA 14377 ||| |||| || || || ||| || | | || || || || || || || Sbjct 5018 AGTATTACAGGTAGTCAAAAACGACTGGCAGATCTATGCGGTGTAGCCCAACCCACAGTT 4959 Query 14378 TGGCGTTGGTTACATGGTGGCGGCATTGACGCTAAGTATGTGGCAGCAATCGTAAAAGCT 14437 ||||||||| |||| |||||||| ||||| || ||||| ||| || ||| Sbjct 4958 TGGCGTTGGCTACACGGTGGCGGAATTGATGCCCGCTATGTAATGAAAATTGTCTCAGCC 4899 Query 14438 ACAGGAGGAAGAATTAAAGCCAG-AGAACTTCGTCCTGA 14475 || || |||| |||||| |||| ||| ||||||| || Sbjct 4898 ACTGGTGGAAAGATTAAA-CCAGCAGATATTCGTCCCGA 4861 Score = 102 bits (112), Expect = 2e-17 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 4641 CTCCATAAAACAAAACTCGCCGTAGCGAGCTCAGATAAAAGAAATCCCCGCGAGTGCGAG 4700 |||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 4701 GATTGTTATTCATTGCCGATATTCATCTTT 4730 || || | |||||||| | ||| || |||| Sbjct 11190 GA-TGCTGTTCATTGCTGCTATACA-CTTT 11163 >seq1130 Length=54118 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 26192 TTTGAAGAGTTCCGCCTATATCATCGCGATGAGAACGGCAAGATTGTCAAGACCAACGAT 26251 ||||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 26252 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 26299 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132307592346930