Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq1009 378 2e-100 seq215 109 2e-19 seq1417 105 2e-18 seq122 86.0 2e-12 >seq1009 Length=4055 Score = 378 bits (418), Expect = 2e-100 Identities = 461/625 (74%), Gaps = 3/625 (0%) Strand=Plus/Plus Query 44158 GCCTGAATATTTATGCTTGCGCCGCACGCCTGCGCGTATTTGTTTAGCGTCTTCATGCTG 44217 || |||||||| ||| |||| || || ||||| || ||| | ||| || ||||| ||| Sbjct 296 GCGTGAATATTGATGGTTGCACCACAGGCCTGAGCATATCTTGTTAAAGTTTTCATACTG 355 Query 44218 GCACCCAGCGGGTTGCCTTCCAGGCGGCTAATTGCGGACGGT-GTAATCCCCATACGTTC 44276 || || | || || | |||||| || || || || ||||| |||||||| || ||||| Sbjct 356 GCTCCTAAAGGATTACTTTCCAGCCGACTGATGGCTGACGGGCGTAATCCC-ATTCGTTC 414 Query 44277 AGCCAGGGCCGATTTACTCAAACCGGCCTTCTCTCTCATCTCATACAGCATTTCGACCAG 44336 ||||| || || || | || || || || |||||||| || || | |||||| |||| Sbjct 415 GGCCAGCGCAGACTTTGTTAACCCCGCTTTTTCTCTCATTTCGTATAACATTTCTACCAT 474 Query 44337 CGCCAGTTCTTTATCTGCTTCCTGATAACCCCGGATTGCCTCCGGGGTGTTGAGCAGACT 44396 | |||||||||| || || || | ||| || | || || || | || ||||| | Sbjct 475 CTCCAGTTCTTTGTCAGCATCTTCATACCCTTTAACAGCTTCTGGAGCATTAAGCAGTTT 534 Query 44397 TTCTTTAACCTGGTTAAATGGGATGCCTTTTACTTTCATTCACTCATCTCCTTCAGGCGC 44456 || || |||||| | ||||| | |||||||||||||| ||||||||||||||||| Sbjct 535 TTGCTTTACCTGGCTGAATGGAACACCTTTTACTTTCATCATTTCATCTCCTTCAGGCGC 594 Query 44457 GTTCTTGCTATTTCTATGGCCCCTGGCGGGGTTTTCGGTGTCTTCTTAACAAATGCATGC 44516 | || || ||||| || || | || || || | ||||| || |||||||||||| Sbjct 595 ATCCTGGCGATTTCAATAGCTTTCGTTGGTGTCTTTTGCGTCTTTTTCACAAATGCATGC 654 Query 44517 AGTAGGTAAATTTCGTGGCCAACTGCGTAAGCGTATAACGTTCTTGCTATGTTCTTATCT 44576 || || |||||||||| || ||| |||||||| | || ||||| || || ||||| Sbjct 655 AGCAGATAAATTTCGTTACCCGTTGCATAAGCGTACAGTGTCCTTGCGATATTTTTATCC 714 Query 44577 CCAACCCGTAACTCAAACAGCCCACCGCCAATTACGCGGCTATGAGGCATTTTTAATTTA 44636 || || | | ||||| ||||| ||||||||||| ||||| ||||| ||||| | ||| Sbjct 715 CCGACTCTCAGTTCAAAAAGCCCTCCGCCAATTACACGGCTGTGAGGTATTTTCATTTTG 774 Query 44637 TTCCCTTCACTTTCCAGCCTTTCAATCAACCTGGTCATCCGGCCTCGTAGCTCATCTGGT 44696 || ||||| |||||||| |||||||| |||| ||| || || || || | |||||| Sbjct 775 TTACCTTCCTGTTCCAGCCGTTCAATCAGTCTGGCCATGCGACCACGCAGATTGTCTGGT 834 Query 44697 AATTCCTGAAGCTCATCCAGTGCCGCCGGGTGGGTTATTACGTTAAACATAGCATATCCT 44756 |||||| | |||||||||||||| | |||||| || || || ||||||||| ||| ||| Sbjct 835 AATTCCAGCAGCTCATCCAGTGCGGTCGGGTGAGTAATCACATTAAACATATTATAGCCT 894 Query 44757 CCTAGCGTGTATAAATATACCAAAA 44781 || | | || ||||| |||| || Sbjct 895 CCGAAAGAATA-AAATACACCATAA 918 >seq215 Length=48791 Score = 109 bits (120), Expect = 2e-19 Identities = 276/415 (67%), Gaps = 11/415 (3%) Strand=Plus/Plus Query 16625 TACAGCTTTAACCAGCTGGAAGTGACGGCCATCGGGTGTACTCGACAGAGCGAAGCCCAC 16684 ||| || ||||| |||||| | | || ||||| || || || || || || || Sbjct 32322 TACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGCGCAG 32381 Query 16685 CGTAAGGGCCTGTGGGGCATACTGACCAACAACAAAGACCGCATGGTTGAGATTGATGTG 16744 || ||| ||||| | || |||||| ||| ||||| ||| | || ||| Sbjct 32382 CGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCGTGTC 32441 Query 16745 GGGCTGGACGGTAAAATCCCGCAGCCGGGCTACATCATTGGACTGGCTGATGAACTTCTG 16804 || |||||||| ||||| | ||| |||||| || || | ||||| ||||| ||| Sbjct 32442 GGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACTGCTG 32501 Query 16805 GCCGGACG---CGTGAACGGCGGGCGTATCAGCGCAGTTAATGGACGGGTGATTACCCTT 16861 ||||| || |||| || ||||| ||| || || || || || || ||||| Sbjct 32502 GCCGGTCGGCCCGTG---GGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCTG 32558 Query 16862 GACCGGGATACTGATGCAAAAGCTGGTGACCGGCTGCAGCTGAACCTGCCGTCAGGCATA 16921 ||||| || || | || ||| | |||||||||||| || |||||||| |||| Sbjct 32559 GACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCCGACGGCAAG 32618 Query 16922 TCTCAGGCCCGGACGATCCAGTCAGTCAACGGTCTCCGACAGGTCACGGTTACGACGGCG 16981 | ||| || || | || |||| ||| ||| ||||||||||| || |||||| Sbjct 32619 TGCGAGGGGCGCACCGTGCAACTGGTCAGCGG---CCGCCAGGTCACGGTCACCACGGCG 32675 Query 16982 TACAGTGAGACGCCGGAG-GTGGAATGTGTCTGGGTGATTGAGTCTGACGATCTG 17035 ||| | | |||| ||| ||| | || || |||| | | || ||||||| ||| Sbjct 32676 TACTCCGTGCCGCCTGAGCGTGAACTG-GTGTGGGCGCTCGACGCTGACGACCTG 32729 >seq1417 Length=11336 Score = 105 bits (116), Expect = 2e-18 Identities = 91/111 (82%), Gaps = 4/111 (4%) Strand=Plus/Plus Query 32514 CACCACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCC- 32572 |||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||| Sbjct 4559 CACCACCGGAGTTCCTACGCTCATGGGTGGTGACCCGAACGGGGGTAGGAATACCGGCCT 4618 Query 32573 -CAATCAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATAAT 32622 ||| | ||||||||||||||| ||||||| ||| | ||||||| || Sbjct 4619 TCAA--GGAAACCGGCCAGCCCGAAGGCTGCCCCGCCCGGACCACCATTAT 4667 >seq122 Length=28749 Score = 86.0 bits (94), Expect = 2e-12 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 32517 CACCGGAGTTCCTACACTCGTTGGTGGTGACCCAGACAAGGGTAGGAATACCGGCCCAAT 32576 ||||| ||||||||| ||| |||||| | ||||||| |||||||||||||||| || Sbjct 14837 CACCG-AGTTCCTACGCTCATTGGTGATAGCCCAGACGGGGGTAGGAATACCGGCGTCAT 14895 Query 32577 CAGCTACCGGCCAGCCCGAAAGCTGCCCTGCCTGAGCCACCATA 32620 | | ||||||||| | | |||||| |||||||| |||||| Sbjct 14896 CGGAAACCGGCCAGGCTAATGCCTGCCCCGCCTGAGCTACCATA 14939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164974158687030