Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_005882.1 Length=36748 Score E Sequences producing significant alignments: (Bits) Value seq523 223 8e-54 >seq523 Length=83696 Score = 223 bits (246), Expect = 8e-54 Identities = 386/553 (70%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 1960 CGTATTGGTCCGTGTCGCCGACGCGCTCGTAGACGCGGACGTACGACTTGCTACCGATCA 2019 |||| ||||| || || || || |||| || ||||||| ||| |||||| || | || Sbjct 54997 CGTACTGGTCGGTATCACCAACACGCTGATACACGCGGATGTAGGACTTGGAGCCAACCA 54938 Query 2020 CCTG-CAGTGCTTCGCCGATGGCTCGCATTGCCTCCAGCCAGCGCGGATCGGTGATGTCC 2078 |||| ||| || |||||||||||| |||| || | ||||||| |||||| || ||| Sbjct 54937 CCTGGCAG-GCGTCGCCGATGGCTTGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCC 54879 Query 2079 AATCGGCGCAGCGCGAGCACGCGGCCGGTGTTGATCTGGCCTTCCTTGTCGGTCGCAAAC 2138 | ||||||| ||| || |||||| | ||| ||| | ||||| | ||| ||| || Sbjct 54878 ATACGGCGCAACGCCAGGACGCGGGCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAG 54819 Query 2139 GCCTGCGTGACGATCGCCTGGATTTCGGGGCGTGCGTCCGTCGTCCAATCGCGAAGGCAC 2198 || | | || | || | |||||||||||| | || ||||| || || ||||| Sbjct 54818 GCATCATTTACCAGCGTGACCACTTCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCAT 54759 Query 2199 TCGTCGATCATCGACTTCGCGGCCTGCAAGCGTTCATCGAACGCGATGCGGTCTTGGATG 2258 ||||| |||| | | ||| ||||| | |||||| ||||| ||||||| || || | | Sbjct 54758 TCGTCAATCAATGCCCGCGCAGCCTGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACG 54699 Query 2259 GCACGCTGGATGCGGTAGCGGCCGTCGAACGAGTACAGGGTGACGTTGCCCTTCTTGCCG 2318 |||||| ||| | | || || ||||| | |||| |||| || |||||||| ||| Sbjct 54698 GCACGCATGATCTTGAAACGCCCATCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCG 54639 Query 2319 CCAACCTTCGAGCCATACTCCTCGGCCGAAAGGTCGATGAAGGCCGAGATATCACCGAAA 2378 || | || | ||| |||| |||||| || |||| ||||| |||||||||||| Sbjct 54638 CCGATCTGGGCGCCGTACTGCTCGGCGCTGAGTTCGACAAAGGCTTCAATATCACCGAAA 54579 Query 2379 ATTCGGGCTTTCAGCTCGACCAGCCCCTTCGATCTC-GTTTTGGCTTCGTCCGCCAGCTC 2437 ||| || | | |||| | | ||| | | | ||||| ||| |||| | Sbjct 54578 GCCGAGGCCTTGAATTTCGCCAG-CACGTCGCTGGCGGCGCGGGCTTTTTCCACCAGGCC 54520 Query 2438 GCGAACGAGGCGATCGCGCTCACGGTCGATCGGCTTGATCATGGTTTCCGGAATCAGGCA 2497 | || | | ||| ||||| ||||||| |||||||||||| ||||||| ||||| | Sbjct 54519 AAGCACCAAGGCATCCCGCTCCAGGTCGATAGGCTTGATCATGCTTTCCGGGATCAGTC- 54461 Query 2498 GCCTTT-CGCGTC 2509 || ||| |||||| Sbjct 54460 GCTTTTGCGCGTC 54448 Score = 158 bits (174), Expect = 3e-34 Identities = 665/1036 (64%), Gaps = 33/1036 (3%) Strand=Plus/Plus Query 14695 CGCCCGTCCAACCTGCGCGGCAAGCAAGGCCGCGTGATCATCGACGAGGCAGCGTTCCAC 14754 || |||||||||||||||||| || ||| || | |||||||| || |||||||| Sbjct 62350 CGTCCGTCCAACCTGCGCGGCCGTCAGGGCGTTGTCGTGATCGACGAAGCCGCGTTCCAT 62409 Query 14755 GAGCAGCTCGGCGAGCTGCTCAAGGCCGCGATGGCGCTGCTGATGTGGGGCGGTCAGGTT 14814 | | | | | ||||||||| || || || ||||| ||| |||| ||||||||| | || Sbjct 62410 GCGGACTTGGCCGAGCTGCTGAAAGCGGCCATGGCTCTGTTGATCTGGGGCGGTGAAGTC 62469 Query 14815 CACATCATTTCGACGCACGACGGCGTCGACAACGCGTTCAATGAGCTGGTCACGGACGTC 14874 || | || || ||||||||| || ||||| || || || ||||||| || || Sbjct 62470 CATGTGATCAGCACCCACGACGGCACGGAGAACGCCTTTAACGACCTGGTCAACGAAATC 62529 Query 14875 CGTTCCGGCAAGAAGCCCTACAGC---CTGCATCGCATCACGTTCGCCGACGCAGTCCAG 14931 || | ||| |||| | | || || ||| ||| |||| || || || Sbjct 62530 CGGGCTGGC---AAGCGCAATGGCGAAGTGTTCCGCTGCACTTTCGGTGAAGCCGTTGCC 62586 Query 14932 GACGGGCTCTACCAGCGCATTTGCCTGCGCAAGGGCGAAGCCTGGACGGCC--GAAGGTG 14989 || || || ||| |||| | |||||||| || | | | | || | | || | || Sbjct 62587 GATGGTCTGTACAAGCGTGTCTGCCTGCGTAAAG--GTATTGAGTACAGACTTGAGGATG 62644 Query 14990 AAGCCAAGTGGGTCAAGGATATTCGCGCGTCGTACGGCGCGGATGCTGAGGAAGAGCTGG 15049 || | ||||| || | || || | ||||||| | || || |||||||||| Sbjct 62645 AAATCGCCTGGGTGAATGGCGTTTACGGTTTCTACGGCGATGCAGCCGACGAAGAGCTGG 62704 Query 15050 ACTGCGTGCCGAAGAACAGCGGCGGCGCATGGCTGTCGCGCGCGCTGATCGAGTCGCGCA 15109 |||||||||| | | ||||||| |||| || || ||| ||||| |||| Sbjct 62705 ACTGCGTGCCCACCCAGGGCGGCGGTGCATTCCTCAGCATGGCCCTGGTCGAGCAACGCA 62764 Query 15110 -TGTCGGCTGACACGCCGGTGCTGCGCTGGGCCTGCAAACAGGGTTTCGAGGTGCTTCCC 15168 | | || | | |||||||||||| || | | || |||| ||| | || Sbjct 62765 GTAACCGC-GCCGTGCCGGTGCTGCGACTTGCGTACCCGCAAGGTTACGAAACCATCGCC 62823 Query 15169 GACCACATCCGCGCAGCCGAATGCCGCGATTGGCTCGAAGCGACGCTCGGCCCGCTGCTC 15228 || || | ||| || || | | || ||| ||||| | | |||||||||| Sbjct 62824 GAGCATCTGCGCCTGGCTGAGTCTCTGGAGTGGTGCGAAGAGCATTTGCTCCCGCTGCTC 62883 Query 15229 ACGGCGCTCCCGGTCGACGCCCGCTCGTACAACGGCGAGGACTTCGGACGGACTGGCGAC 15288 ||||| ||||| | |||| | | | | ||| ||||||||| || | |||||| Sbjct 62884 TCGGCGATCCCGCTGGACGTACAGAGCTTCTATGGCATGGACTTCGGCCGCTCCGGCGAC 62943 Query 15289 CTGACGGTCCACGTGCCGCTGATCGAACAACAGAACCTGGTTCGC---CGCGTGCCGTTC 15345 || |||| | |||| || || || ||||||| ||| ||| ||| ||| || Sbjct 62944 CTCTCGGTTTTCTGGCCGTTGCTCAAAGAACAGAATCTG---CGCAAGCGCACGCCCTTT 63000 Query 15346 ATCGTCGAGCTGCGCAACGTGCCGTTCCGGCAGCAGGAGCAGATCGCCTTCTACCTGCTT 15405 | ||||||||||| ||||| |||||| ||| || ||||| |||||| | || Sbjct 63001 GTGGTCGAGCTGCGTAACGTCCCGTTCAAGCAACAACTTCAGATTAAGTTCTACATTATT 63060 Query 15406 GATCGGCTCCCGCGCTTCACGGGCGGCGCCTTCGACGCGCGGGGCAACGGCCAATACCTC 15465 ||| | || |||| |||||| ||||| |||| |||||| | || Sbjct 63061 CGTCGCTTACCCAACTTCCTCAAAGGCGCCGATGACGCCAGGGGTAACGGCTCGCAACTG 63120 Query 15466 GCAGAAGTCGCGATGCAG-CG-CTACGGC-GCATCGCGCATCCAGCAAGTGATGCTGTCC 15522 |||||| | ||| | || | |||| || | ||||| ||| |||||||| || Sbjct 63121 TCAGAAGATAC--TGCCGTCGAGTTCGGCTTCAAC-CGCATTGAGCGGGTGATGCTCACC 63177 Query 15523 GAGTCGTGGTATCGCGAGCACATGCCGCCCGTGAAGGCGGCGTTCGAAGACGGCACGATC 15582 ||| ||||| || || ||||||| || | ||||| || | ||||||| ||| || Sbjct 63178 GAGGGCTGGTACCGGGACAACATGCCACCGTTCAAGGCAGCCCTGGAAGACGACACCTTC 63237 Query 15583 GACGGCCTCCCGAAGGATGCCGACGTGCTCGCGGACCTGCGCGCCGTACAGGTCATCAAG 15642 ||| | |||| || ||||| || ||| | || || | | | ||||| Sbjct 63238 TACGACATCCCTGCCGACAAAGACGTAGTCAGTGACGTTCGGGCTTTCCGCATGGTCAAG 63297 Query 15643 GGCGTGCCGCGCATCCCGGACGTCCGCGCGACCGGCCAGGACGA------CGG---CAAG 15693 ||||| | ||||||||||| || | | | ||| ||| ||| |||| Sbjct 63298 GGCGTAGCCCGCATCCCGGAAAAACGGACCAATGAAAAGGGCGAAAAAGCCGGACCCAAG 63357 Query 15694 CGCCACGGCGACGCCG 15709 |||||||||||||||| Sbjct 63358 CGCCACGGCGACGCCG 63373 Score = 107 bits (118), Expect = 5e-19 Identities = 288/436 (66%), Gaps = 27/436 (6%) Strand=Plus/Plus Query 13338 TGCAGTACGTGCGCCGCGAAGACTACGTGCGCAACCAGACCGTCATCGAAGCCAAGCTCG 13397 |||| ||||||||||| ||||||||||||||| ||| ||||| ||||| |||||||| | Sbjct 61029 TGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCAAGCTTG 61088 Query 13398 ACGCGATCGCGCTCAGATTCGAAAACTTACAACTCCGGGGAAATCAATGACGCCCACCAA 13457 | ||| | || |||| | |||| | | ||| | ||| | ||| | || Sbjct 61089 ATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATT-----AAAAGGACTGA-----AGTAA 61138 Query 13458 TCCGCTGGGAATCGACCACGCCAAGGTGCGCCGCGAATCGCTGCGCTGGTATCTGATTCT 13517 || |||||| |||||| |||||| ||||| ||||||||||| | || Sbjct 61139 -----TGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAA 61193 Query 13518 GGCGCTGTACAACGCGCGGCCCGAGGAAGTCGTCGAGGACGTGATCCAGATG---ACGAT 13574 | | ||| ||| | |||| |||| || || || | || | ||| | || || || Sbjct 61194 GACCCTGGACACCTCGCGCCCCGTAGA--TCCTC-ATGAGGCTATCGTGTTGTCCACCAT 61250 Query 13575 GCGCTCGATCTTCGCCGACATCACGGCGCTTGAGGTGCGCAAGGAACTGGACTACCTCGC 13634 | |||| ||||| ||| | | ||| ||||| ||||| |||||||| || Sbjct 61251 CCAGGGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGC 61310 Query 13635 CGATCGCGTGCTGGTGAAGCTGCGCAAGGAACCGTCCGGCCGCTGG---TGGGGCGATCT 13691 ||| || ||||||| ||| ||| | || ||| ||| || ||| || Sbjct 61311 CGACCGTAGCCTGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGC---CT 61367 Query 13692 CACGCGCTACGGCGTCGACATCGCCGAGTACACGATCGATTGCGAGCCGGGCATCGCGCG 13751 || | |||||| |||||||| || || ||||| |||| ||| | || ||| | || || Sbjct 61368 GACCCACTACGGGGTCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCG 61427 Query 13752 GCCGGCCAAGTACTGG 13767 || | ||||||||| Sbjct 61428 ACCAGAAAAGTACTGG 61443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117452463305100