Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006548.1 Length=38439 Score E Sequences producing significant alignments: (Bits) Value seq523 226 7e-55 >seq523 Length=83696 Score = 226 bits (250), Expect = 7e-55 Identities = 323/455 (71%), Gaps = 0/455 (0%) Strand=Plus/Minus Query 2576 CCATGTCACACCCCCGCGATATCAAGAGGAATGGAGCGGTACTGGTCGGTGTCCCCGACC 2635 ||||||||||||||||| |||||||| |||| |||||||||||| || || || Sbjct 55034 CCATGTCACACCCCCGCAATATCAAGGCTGATGGGCTCGTACTGGTCGGTATCACCAACA 54975 Query 2636 CGCTCCTGGATACGCACGTACGCCTTGGTGCTCACGACCTGGACAGCCTCGCCGATGGCC 2695 |||| | | || | ||| | ||||| || || |||||| || ||||||||||| Sbjct 54974 CGCTGATACACGCGGATGTAGGACTTGGAGCCAACCACCTGGCAGGCGTCGCCGATGGCT 54915 Query 2696 TGCATTGCACGCTGCCAACGTTCGTCATCGATCTGCAGGCGGCGCAGGGCAAGCACGCTG 2755 ||||| || |||||||| ||||| || || | || ||||||| || || |||| | Sbjct 54914 TGCATGGCGCGCTGCCAGCGTTCATCGGTAATTTCCATACGGCGCAACGCCAGGACGCGG 54855 Query 2756 CCGGTACGGATGTTCCCAGCTTGGTCCACGCGGAACGCATCGTTGATCAGCGTGATGACC 2815 | || ||||||| || |||||| ||||| ||||| || | |||||||| || Sbjct 54854 GCTGTGCGGATGTCGCCTTTTTGGTCAGTCCGGAAGGCATCATTTACCAGCGTGACCACT 54795 Query 2816 TCCGCGCGAGCACCTTCCGTCCATTCGTGGAGGCACTCGTCGATCAGCGCCTTGGCCGCC 2875 || | ||| || || ||||| || | ||||| ||||| |||| ||| || ||| Sbjct 54794 TCGGGGCGTGCCCCGGTGGTCCAGTCCCGCAGGCATTCGTCAATCAATGCCCGCGCAGCC 54735 Query 2876 TGCAGGCGCTCGTCGAAGGCGATGTTGTCGGCCATGGCCCGAATGACCTTGTAGCGACCG 2935 || ||||| |||||||| |||||| | || | ||| || |||| |||| | || || Sbjct 54734 TGGAGGCGTTCGTCGAAAGCGATGCTTTCCTGTACGGCACGCATGATCTTGAAACGCCCA 54675 Query 2936 TCGAAGCTGACCAGAGAGGCGTTGCCCTTCTTGCCTCCTACCTTCGCCTGGTACTGCTCG 2995 |||||||||| ||| | | || |||||||| || || | || || |||||||||| Sbjct 54674 TCGAAGCTGATCAGGCTGACATTTCCCTTCTTCCCGCCGATCTGGGCGCCGTACTGCTCG 54615 Query 2996 GCCGACAGGGTGATGAAGGCTTCGATATCGCCGAA 3030 || || || |||||||| ||||| ||||| Sbjct 54614 GCGCTGAGTTCGACAAAGGCTTCAATATCACCGAA 54580 Score = 138 bits (152), Expect = 3e-28 Identities = 345/519 (66%), Gaps = 9/519 (2%) Strand=Plus/Plus Query 12138 CGGCCAAGGCCGATGAGATCCCGCGGGCC--GCCGAGCAGTATCGCCGCGTGCTGGTTCG 12195 ||||||||||||| ||||||| | || || |||| || || |||| ||| || Sbjct 59422 CGGCCAAGGCCGA---GATCCCG--GACCAAGCGGAGCGCTACCGTCGCGACCTGACCCG 59476 Query 12196 AGCGGCGCATGCTGAGTGGGGACTGTCGGCGCCGATCGCTACGTTCGGTGCTCAAGTGCA 12255 || || ||||| ||||| || || ||| | | || |||| || || | || Sbjct 59477 TATCGCCCAGGCTGAATGGGGCTTGGATGCTCCGTTGTCCACCTTCGCCGCACAGATCCA 59536 Query 12256 TCAGGAGAGCCGCTGGC-GTGCTGATGCCCGCTCGCCCGTCGGCGCACAGGGCCTGGCGC 12314 ||||| ||||||||| || | || || ||||| ||||| || || ||| ||| | Sbjct 59537 CCAGGAAAGCCGCTGGAAGTTC-GACGCGAAATCGCCGGTCGGTGCGCAAGGCTTGGGCC 59595 Query 12315 AGTTTATGCCCGGTACCGCTGAGTGGATCGCCGGCCTGTATCCGGCCGCCCTCGGCACCA 12374 || | |||||| ||||| ||| | |||| |||| || |||||||| | | Sbjct 59596 AGGTGATGCCCTCGACCGCCACCTGGCTTGCCGAGCTGTTCCCCAAGGCCCTCGGAAAGA 59655 Query 12375 ACCAGCCGTTCAATCCAGGCTGGGCACTGCGCGCGCTGGTCACCTACGACCGTTGGCTCT 12434 | | |||| || || | ||| | ||| ||||| |||| ||| ||||| ||||| Sbjct 59656 TCGAACCGTATAACCCGGTTTGGTCCATGCAGGCGCTTGTCAGCTATGACCGCTGGCTGG 59715 Query 12435 ACGACCGAAACCAGGCCTCCAGCGAGTGTGATCGCTGGGCATTCGTACTGTCCGCTTACA 12494 |||| | |||||| || || || | |||| | | || ||||| || | Sbjct 59716 CGAACCGCATCCAGGCGCGTGGCCCCTGCGAACAAGGGGCGCTGATCCTTTCCGCCTATA 59775 Query 12495 ACGGCGGCCAAGGGTGGGTAAATCGCGACCGTAAGCTGGCCTCGGCATCCGGCGCCGACC 12554 ||||||| || ||||| | || || ||| |||| ||||| || ||||| | Sbjct 59776 ACGGCGGTTTTGGCTGGGTGATCAAAGATCGCAAGTTGGCATCGGCTAAGGGTGCCGATC 59835 Query 12555 AGCTGGCCTGGTTCGATTCCGTCGAGCGCTTCAACGCCGGGCGCTCGGCCGCCAACTTCC 12614 |||| |||||||| | || ||||| || ||||| ||| ||||| ||||| ||| Sbjct 59836 CGCTGACCTGGTTCAACTCTGTCGAACGGTTCAATAACGGCCGCTCCGCCGCTGCGTTCA 59895 Query 12615 GCGAGAACCGCAACTACCCGCGCCTCATCCTGCTTCGCT 12653 | || ||||| | ||||||||||| |||||| | |||| Sbjct 59896 GGGAAAACCGTCAATACCCGCGCCTGATCCTGTTGCGCT 59934 Score = 131 bits (144), Expect = 4e-26 Identities = 288/433 (67%), Gaps = 8/433 (2%) Strand=Plus/Plus Query 13779 TGCCGATCCAGTACGTCCGCCGCGAGGACTATATCCGCGGCCAGAGCGTGATCGAGGCGA 13838 |||| | || ||||| ||||| || ||||| | |||||||| | |||||||||||| | Sbjct 61023 TGCCCGTGCACTACGTGCGCCGGGAAGACTACGTGCGCGGCCAAACCGTGATCGAGGCCA 61082 Query 13839 AGCTCGACGGTTTGGCCGTGAAGCTGGAAAACGCGCAGCTGCGCAGTCTGATGGGAGCAA 13898 |||| || | |||||| | ||||| |||| || || | | |||| | Sbjct 61083 AGCTTGATGCGTTGGCCCTCAAGCTAGAAACCGTTCAATTAAAAGGACTGAAGT------ 61136 Query 13899 AAAATGCAAATTGACCTGGCCAAGACCCGGCGCGAAGCCCTGCGCTGGCTGATTCTACTG 13958 |||| | || ||| ||||| || || || ||| ||||||||||| || | | Sbjct 61137 --AATGAACATCGACGCCGCCAAAACGCGCCGGGAATCCCTGCGCTGGTACATCATCAAG 61194 Query 13959 ACCCTGAACAATGCTCGGCCGGTGGGCGCCTACGAGGGGCCGGTCCTCTCGGTCGCACAG 14018 |||||| ||| | || || || | | | |||| || | || | ||| Sbjct 61195 ACCCTGGACACCTCGCGCCCCGTAGATCCTCATGAGGCTATCGTGTTGTCCACCATCCAG 61254 Query 14019 AGCGAGTACCCCGACGCCACACCGCTGGAGATCCGCCGCGAGCTGGACTACTTGGCCGAC 14078 || || ||||||||||| | ||||| | |||||||| || |||||| |||||||| Sbjct 61255 GGCATCTATCCCGACGCCACCACCATGGAGCTGCGCCGCGAACTCGACTACCTGGCCGAC 61314 Query 14079 CGTGACCTGGTGACCTTGGTCAAGGAACCATCCGGCAAGTGGTTCGCCGATTTGACCCGG 14138 ||| ||||||||| | | ||| | || ||| |||| || | |||||| Sbjct 61315 CGTAGCCTGGTGACGCTAGACAAAAAGCCCAACGGTGTGTGGATCTGTGGCCTGACCCAC 61374 Query 14139 TATGGCACTGACGTCGCCGAGTACACCATCGACTGCGAACCCGGCATCGCTCGCCCCAAG 14198 || || ||| | || || |||||||||| |||| |||| ||| | || || || | Sbjct 61375 TACGGGGTCGACATTGCGGAATACACCATCGCCTGCAAACCAGGCGTTGCCCGACCAGAA 61434 Query 14199 AAGTACTGGTGAC 14211 ||||||||||||| Sbjct 61435 AAGTACTGGTGAC 61447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122862763371810