Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq48 125 6e-24 seq593 116 3e-21 seq456 111 1e-19 >seq48 Length=44992 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | |||||| |||||||| | |||||| ||| | |||| | ||||| Sbjct 22384 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCG 22325 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| ||||||| | | ||||||||| || ||||| || || ||||| | | Sbjct 22324 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGA 22265 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || | ||| || |||| ||||| || | |||||||| ||| Sbjct 22264 ATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTT 22205 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || |||||||||||||| Sbjct 22204 CCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq593 Length=58250 Score = 116 bits (128), Expect = 3e-21 Identities = 176/249 (71%), Gaps = 1/249 (0%) Strand=Plus/Minus Query 94760 GGTTTTTTAAAAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTC 94818 ||| ||| |||| ||| || ||||| | | || | |||||||| | ||||||||| Sbjct 29397 GGTCTTTACAAATATTTGCATACCTCCACGAAGGCGGAGTACCAAGTGAAGAGTAGATTC 29338 Query 94819 CTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||||| | ||| || || | ||| | |||||| || || |||||| ||||||| Sbjct 29337 CTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAGAT 29278 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 | | ||| ||||| || || || ||||| ||||| | ||| || | |||||| | | Sbjct 29277 GAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGACATTGTC 29218 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || ||||||| || || || | |||||||| |||||||| | || || ||||| Sbjct 29217 GATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTACAAA 29158 Query 94999 GATCTGCAT 95007 ||| ||||| Sbjct 29157 GATTTGCAT 29149 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | |||||| |||||||| | ||| || || | ||| | |||||| Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| ||||||| | | ||| ||||| || ||||| ||||| ||||| | Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| ||| ||| ||||||| || || || | |||||||| || Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||||| || |||||||| ||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||||||||||||| | ||| || ||| | ||| | |||||| Sbjct 29585 ACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 29526 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || |||||| | || || | |||||| ||||| || ||||| ||||| ||||| | | Sbjct 29525 AGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGA 29466 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || | ||| || | ||| ||||||| ||||| || | || || || || Sbjct 29465 ATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTTG 29406 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || ||||| || ||||| Sbjct 29405 CCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | || || |||||||| | ||| || ||| | || || || ||||| Sbjct 29813 ACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGG--AAAGAGTACGACCATCCT 29756 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 | || || |||||| ||||||| | | ||| ||||| || || || || || ||||| | Sbjct 29755 CGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCT 29696 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || | |||||| ||| ||||||| | ||||| || | || || || | Sbjct 29695 GGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCT 29636 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||||||||| || |||||||| ||||| Sbjct 29635 TGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq456 Length=67341 Score = 111 bits (122), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 |||||||| | |||||| |||||||| | ||| ||||| | || || || |||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCG--AAAGGGTACGACCGTCCT 21431 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || |||||| ||||||| || | ||||||||| || || || || || ||||| | Sbjct 21432 CCAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTT 21491 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || |||||||| | | ||||||| || || || | |||||||| | Sbjct 21492 GGATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCT 21551 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || | ||| || ||||||||||||||| Sbjct 21552 TTCCTGTTAAAGTCTTAACAAAGATCTGCATG 21583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448212721021800