Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq109 91.5 2e-14 seq441 89.7 8e-14 >seq109 Length=142265 Score = 91.5 bits (100), Expect = 2e-14 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||| ||||| || ||||||||||| || ||||||||| | || |||||||| || ||| Sbjct 49697 GATTACATCTTCGGTATCACCAAGCCCGCCATCCGTCGTTTAGCACGTCGTGGAGGTGTC 49638 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| |||| |||||| | ||| | ||| | ||| | || Sbjct 49637 AAGCGTATCTCGTTCCCAATCTACGAAGAGGTCCGTAACGTTCTCCGTGCTTTCTTGGAG 49578 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| |||| | | ||| || || ||||| || ||| || || ||| | Sbjct 49577 AATGTCATCCGTGATTCCGTTGCCTACACTGAACACGCCAACCGTCGTACCGTTACCGCT 49518 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 |||||| |||||||||| | || ||||| |||| | |||||||| Sbjct 49517 ATGGATGTCGTCTATGCCCTCAAGAAGCAAGGTCGTACCCTCTATGGTTT 49468 >seq441 Length=11522 Score = 89.7 bits (98), Expect = 8e-14 Identities = 147/211 (70%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 16482 AGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATT---GG 16538 |||| || || |||||| | || ||||||||||||||||||||| |||| ||| Sbjct 5863 AGCCTGCCATTCGTCGTTTAGCACGTCGTGGTGGAGTCAAGCGTATCTC---ATTCCCAA 5807 Query 16539 TCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTT 16598 ||||||| ||| | ||| | ||| | ||| | ||| ||| || | |||| || Sbjct 5806 TCTATGAGGAGGTCCGTAACGTTCTTCGTGCCTTTTTGGAGAACGTCATTCGTGATTCTG 5747 Query 16599 TCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCAT 16658 | ||| || || ||||| || ||| || || ||| | |||||| | |||||||| Sbjct 5746 TTGCCTACACTGAACACGCAAACCGTCGTACCGTTACCGCAATGGATGTAGTCTATGCCC 5687 Query 16659 TGAAACGTCAAGGCCGTAAGATTTATGGTTT 16689 | || |||||||||| |||||||||| Sbjct 5686 TCAAGAAGCAAGGCCGTACCCTTTATGGTTT 5656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062395130465