Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq211 86.0 8e-12 seq4094 82.4 1e-10 >seq211 Length=76543 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 53947 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 53888 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 53887 TCCGGCTCCCGC 53876 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 164824 CGCGGGATGGAACAGTCTGGTAGTTCAGCGGTCTCATAAGCCGCAGGTCGTGGGTTCAAA 164883 ||||||||||| ||||||||||| || ||| ||||||| ||| ||||||| |||||||| Sbjct 54230 CGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCAAA 54171 Query 164884 TCCCACTCCCGC 164895 ||| ||||||| Sbjct 54170 TCCGGCTCCCGC 54159 >seq4094 Length=1744 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 165225 AGTGGCGGAATTGGTAGACGCGCTGGGTTTAGGTTCCAGTGAATTAATTCGTGGAGGTTC 165284 |||||||||||||| ||||||||||| |||||||||||||| | | ||||| ||||| Sbjct 1548 AGTGGCGGAATTGGCAGACGCGCTGGATTTAGGTTCCAGTGTCTCAGGACGTGGGGGTTC 1607 Query 165285 AAGTCCTCTCTTGGGCAC 165302 |||||| | || | |||| Sbjct 1608 AAGTCCCCCCTCGCGCAC 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627858066352000