Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006949.1 Length=46900 Score E Sequences producing significant alignments: (Bits) Value seq24 250 7e-62 seq334 116 1e-21 seq2164 86.0 2e-12 >seq24 Length=857 Score = 250 bits (276), Expect = 7e-62 Identities = 258/341 (76%), Gaps = 8/341 (2%) Strand=Plus/Plus Query 45141 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATCG 45200 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 505 TTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAACGCCATTA 564 Query 45201 CCTACAAAGAGCAGCGCGATACCGTTACTCATA-AGCTGACGCTGGCGAACGCGACAATT 45259 ||||||||| |||||||| | | | || | | |||| ||||||||||||| ||||| Sbjct 565 CCTACAAAGCCCAGCGCGACAAAAATGC-CAGAGAACTGAAGCTGGCGAACGCGGCAATT 623 Query 45260 ACCGACATGACGAAGCGTCAGCGTGATGTTGCCGACCTCGATGCAAGATATATAAAGGAA 45319 || |||||| || ||| |||||||||||||| | || |||| || ||| | ||||| Sbjct 624 ACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACACGAAGGAG 683 Query 45320 TTAGCCGATGCGAAAGCTGAGAATGATGCTTTGCGCGATGATGTCNNNNNNNNNNNNNNN 45379 ||||| ||||||||||||| ||||||||| |||| |||| ||| Sbjct 684 TTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCGTGATGGTGTTGCCGCTGGTCGTCGT 743 Query 45380 NNCCTGCTCGTCAACGCCACCTGTCCCGCAATGCCAACAGGTAAATCCACCTCCGCCGCC 45439 ||| | |||| || ||||| || ||| || || ||||| ||||| || Sbjct 744 CGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGC------GTGAAGCCACCACCGCCTCC 797 Query 45440 AGCGTGGATAATGCATCCCGCCCCAGACTGGCAGACTCCGC 45480 |||||||||||||| || |||| ||||||||||| |||| Sbjct 798 GGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGC 838 >seq334 Length=953 Score = 116 bits (128), Expect = 1e-21 Identities = 140/185 (76%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 46640 GCGTTGTATCGTCGCAGTATCACCGCATTAACAATGACCGCAGCCCTTAATGGGAGCTCC 46699 ||| ||||||||||| |||| |||||||||| ||||||| ||||| | |||| ||| Sbjct 447 GCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCG-ACGGGGAATTCC 389 Query 46700 TTCTGCGTGAGTGTGCAATGATAATCAATAACGATGCATACCGGGGTTTGCAGCTTTTAC 46759 |||||||||||||||| |||||||| ||||||||| |||||| ||| | | | || Sbjct 388 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTTACTGTGCTGAC 329 Query 46760 GATGGCTGGTTTATCCCTCATTGCTCGCCATCTCGATGCGGGGGTAGAAGAAATCGAGGG 46819 || || ||| ||||||| | |||| | || |||| ||| ||||||| || || Sbjct 328 AGACGCAGGGTTA-CCCTCATAG-TCGCTTTTCCGGTGCGATGGTGGAAGAAACCG-GGA 272 Query 46820 TGTTT 46824 ||||| Sbjct 271 TGTTT 267 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 26342 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 26393 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149933460512220