Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq98 109 6e-19 seq689 93.3 4e-14 >seq98 Length=772300 Score = 109 bits (120), Expect = 6e-19 Identities = 300/454 (66%), Gaps = 12/454 (3%) Strand=Plus/Plus Query 21183 TTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAG 21242 ||||||||||||||| || | ||| || || ||||| || || |||| || || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 21243 ATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATA 21302 |||||||||||||| ||||| | | | ||||||| || |||||||||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 21303 ATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCA 21362 |||| ||||| ||||| || ||||| || |||| | || |||||| ||||||| Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 21363 ATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTA 21422 || || | || | ||| | ||| ||||| || || || || || | Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 21423 TATTTATTATCCTAGATGTACTAGGGGGATACAATAATTG-----TTTAAACATCAAACA 21477 | | || | | || | || || | || ||| |||| | | || || Sbjct 410340 T-TCCATGAAC---GACTTCCT-GGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCA 410394 Query 21478 TGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACC 21537 ||||| |||||||||| || ||||| || || || |||||| ||| |||| || Sbjct 410395 GGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCC 410454 Query 21538 GGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTG-AAAAGAAAA 21596 ||||| | ||||| ||||| ||||| || || || || | ||||| | ||||||| Sbjct 410455 TGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGA-ACAGAAGCTCCCGCTGAAGAAAA 410513 Query 21597 TGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 |||| || || || || || || || || ||||| Sbjct 410514 TGCCTTCCACTGCGGCGAAAGCCACCAAACGTTC 410547 >seq689 Length=46727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 || ||| ||||| || || ||||||||||| || | || || || || || ||||| || Sbjct 18319 CAGACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGT 18260 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 ||||| ||||| ||||| | ||| || | |||||| ||||| || | || || || | Sbjct 18259 CAAACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGA-ACAGAAACTACCAGAGA 18201 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 | || || ||||| ||||| ||||| || || || || || Sbjct 18200 AAAAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTC 18161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531807684116200