Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007022.1 Length=172963 Score E Sequences producing significant alignments: (Bits) Value seq1098 89.7 6e-13 seq160 89.7 6e-13 seq1175 87.8 2e-12 seq453 86.0 7e-12 seq328 86.0 7e-12 >seq1098 Length=31487 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 6974 TCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGT 7033 ||||| || |||||| || | | || | ||||| ||||| ||||| || | || Sbjct 2130 TCGCCCGGCTTCAGCATGGCGAAGAACACGCCCTGGTTCGCCTGCGAACCCGAGTTCGGC 2189 Query 7034 TGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCG 7093 || ||||| ||| | | | | ||||| | || | || || || ||||| | |||| Sbjct 2190 TGCACGTTGGCGCATTCGGCGCCGAACAGCTGCTTGACGCGGTCGATGGCCAGTTGCTCG 2249 Query 7094 ATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATAC 7153 | | ||| | | | | || |||||||| || || ||||||||||| || || |||||| Sbjct 2250 GCCACGTCGACGTATTCGCAGCCGCCGTAGTAGCGCTTGCCTGGATAGCCTTCGGCATAC 2309 Query 7154 TTGTTGGTAAAAATAGAACCTTGCGCTTTCATAACATCATCGGACACATAGTTTTCGGAT 7213 ||||| || | || |||||||||| ||| || | ||| |||||||| || Sbjct 2310 TTGTTCGTCAGCTGCGAGCCTTGCGCTTCCATTACGGCTGGCGACGTGTAGTTTTCCGAC 2369 Query 7214 GCAATCA 7220 || |||| Sbjct 2370 GCGATCA 2376 >seq160 Length=487619 Score = 89.7 bits (98), Expect = 6e-13 Identities = 154/222 (69%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 7001 ACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGCGAAATTGCA--ACTAA 7058 || ||| ||| ||||||| ||| || || ||||| || || | | ||| || | Sbjct 302602 ACCGCTGCGTTAGCCTGTGCACCTGAGTGCGGTTGTACATTGACCCAG--GCAGCACCGA 302545 Query 7059 ACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATCTCATCGGCTTTTACACAACCGC 7118 | |||| ||| ||||||||||| || | || || || ||||| | |||| || | Sbjct 302544 ATAGTTTTTTTGCACGCTCAATCGCTAAATTTTCAATTTCATCTACAACCTCACATCCAC 302485 Query 7119 CGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGTAAAAATAGAACCTTGCG 7178 | ||||| ||||||||||| || || ||||| || ||||| |||| ||||| | Sbjct 302484 CATAATAGCGTTTGCCTGGCAGGCCTTCCGCATATTTATTGGTTAAAACTGAACCAGCAG 302425 Query 7179 CTTTCATAACATCATCGGACACATAGTTTTCGGATGCAATCA 7220 ||| |||||| | | | || ||||||| |||||||||| Sbjct 302424 CTTCCATAACCTGTTTGCTGACGAAGTTTTCAGATGCAATCA 302383 >seq1175 Length=84778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 67197 TTGGTGCCGATTGTCCGACTCGAACGGACCACCTGATGCTTACAAAACAACTGCTCTACC 67256 |||||||||| || | | |||||| | |||||||||| ||||||| ||||||||||||| Sbjct 4999 TTGGTGCCGACTGCCGGTTTCGAACTGGCCACCTGATGATTACAAATCAACTGCTCTACC 5058 Query 67257 GGATGAGCTAAATCGGCA 67274 ||||||||| |||||| Sbjct 5059 AAATGAGCTAAGTCGGCA 5076 >seq453 Length=63522 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 6964 CAATACTGAATCGCCTGGACTCAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACC 7023 |||||||| |||||||| ||| | ||| | | ||||||||||| ||||| | || Sbjct 12887 CAATACTGTGTCGCCTGGTTGCAGAAGTGCAAAGAACACAGCTTGGTTGGCCTGGGTGCC 12946 Query 7024 GGAATGGGGTTGAACGTTTGCGAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGC 7083 ||| || ||||| ||||| |||| ||| | || |||||||| || || |||| || Sbjct 12947 GGAGTGTGGTTGCACGTTCACGAAGCCGCAGCCGAAAAGTTCTTTTGCGCGGTCAA-TGG 13005 Query 7084 CAGGTT-CTCGATCTCATCGGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATC 7142 ||| || ||||| | ||||| || ||||||| | || |||||||| || | Sbjct 13006 CAGCTTGCTCGACAACGTCGGCGAAATCAGCGCCGCCGTGGAAACGCTTGCCTGGGTAGC 13065 Query 7143 CCTCAGCATACTTGTTGGT 7161 | ||| | ||||||||| Sbjct 13066 CTTCAACGGTCTTGTTGGT 13084 >seq328 Length=55360 Score = 86.0 bits (94), Expect = 7e-12 Identities = 144/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 6985 CAGCAACGCATGGTAAACAGCTTGGTTTGCCTGTGAACCGGAATGGGGTTGAACGTTTGC 7044 ||||| || |||| || || ||| || || || |||| || || || ||||| || Sbjct 8941 CAGCAGGGCCAGGTACACGGCGCTGTTGGCTTGGGAGCCGGCGTGTGGCTGGACGTTGGC 9000 Query 7045 GAAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTC---GATCTCATC 7101 | ||| | | |||||||| || || || || || ||||| | ||| ||| || | Sbjct 9001 GTAATCGGCGCCGAACAGTTCCTTGGCGCGGTCGATGGCCAGTTGCTCAACGATGTCGAC 9060 Query 7102 GGCTTTTACACAACCGCCGTAATACCGTTTGCCTGGATATCCCTCAGCATACTTGTTGGT 7161 | | | ||||||||||| || || ||||| ||||| || || || ||||||||||| Sbjct 9061 GAACT---CGCAACCGCCGTAGTAGCGCTTGCCCGGATAGCCTTCGGCGTACTTGTTGGT 9117 Query 7162 AAAAATAGAACCTTGCGCTTTCATAAC 7188 | || |||||||| || | ||| || Sbjct 9118 CAGAACCGAACCTTGAGCCTCCATCAC 9144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553256728535400