Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq593 134 1e-26 seq48 109 5e-19 seq420 100 3e-16 seq2393 98.7 1e-15 seq1623 86.0 6e-12 >seq593 Length=58250 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | ||||| || | || || | ||| | || | Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || |||||| ||||| ||||| || || ||||||||| Sbjct 29437 GACACCATCGACAATGTTAAGACCAAGATTCAAGACAAGGAAGGAATTCCACCCGATCAA 29496 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||||||||| || ||| || |||||||| |||| | | | || |||||| ||| Sbjct 29497 CAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTACAAC 29556 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| ||||||||| ||||| |||| || Sbjct 29557 ATTCAAAAGGAATCTACTCTCCATTTGGTTCT 29588 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || || |||||||| | |||||| | ||| | || | Sbjct 29149 ATGCAAATCTTTGTAAAGACCTTGACTGGAAAGACCATCACCCTGGAAGTTGAGGGATCT 29208 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 29209 GACACCATCGACAATGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 29268 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | ||| || |||||||| |||| | | | || ||||| ||| Sbjct 29269 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAAC 29328 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||||||| | || |||| || | ||| | ||||| Sbjct 29329 ATTCAAAAGGAATCTACTCTTCACTTGGTACTCCGCCTTCGTGGAGG 29375 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | ||||| || | |||||| | || | || | Sbjct 28921 ATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTTGAGGGATCT 28980 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| ||||| ||||| || || ||||||||| Sbjct 28981 GACACCATCGATAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCCGATCAA 29040 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | ||| || |||||||| |||| | | | || ||||| ||| Sbjct 29041 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAAC 29100 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || |||||| | ||| |||| || | ||| | ||||| Sbjct 29101 ATTCAAAAGGAGTCTACTCTTCATTTGGTACTCCGCCTTCGTGGAGG 29147 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | |||||||| || | ||||| || | || ||| | || | || Sbjct 29605 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACCTTGGAGGTCGAGGGCTCT 29664 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || || || || ||||||||| Sbjct 29665 GACACCATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCACCCGATCAA 29724 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||| | | ||| || |||||||| |||| | | | | |||||| ||| Sbjct 29725 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 29784 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || || || ||||| |||| || Sbjct 29785 ATTCAAAAGGAGTCAACCCTCCATTTGGTTCT 29816 >seq48 Length=44992 Score = 109 bits (120), Expect = 5e-19 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | || || || || | ||||| || | |||||| | ||| | || ||| Sbjct 22404 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCA 22463 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | ||||| ||||| ||||| ||||| || || |||||| Sbjct 22464 ---GACACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 22520 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 |||||||||||||| | | |||||| || ||||| |||| | | | | |||||| Sbjct 22521 CAACAAAGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTAC 22580 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||| || |||||| | ||| |||| || | || | ||||||| Sbjct 22581 AACATTCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGTGGAGGAA 22632 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 26758 AGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAAT 26817 ||| || || |||||| | || ||||| ||||| ||||| || | ||||| | || Sbjct 21937 AGTTAATCATCATGCAAATTTTCGTAAAGACATTGACTGGCAAGACCATCACACTTGAGG 21996 Query 26818 TAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATAC 26877 | || | || |||||||| | ||||| ||||| ||||| ||||| || | Sbjct 21997 TCGAGGGATCTGATACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCC 22056 Query 26878 CTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCA 26937 | |||||||||||| | ||||||| || ||||| |||||||| |||| | | | Sbjct 22057 CACCCGATCAACAACGTCTCATTTTCGCTGGCAAGCAACTCGAGGATGGCCGCACTCTAT 22116 Query 26938 GCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| ||||| ||||| || |||||| | || |||| || | || | ||||||| Sbjct 22117 CCGACTACAACATACAAAAGGAGTCTACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAA 22176 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| |||||| ||||| ||||| || || ||||||||| Sbjct 22692 GATACCATCGACAACGTCAAGACCAAGATTCAAGACAAGGAAGGAATCCCACCCGATCAA 22751 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | ||||||| || ||||| || ||||| |||| | | | || ||||| ||| Sbjct 22752 CAACGTCTCATTTTCGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTCTCTGACTACAAC 22811 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || |||||| | || |||| || Sbjct 22812 ATTCAAAAGGAGTCTACTCTTCACTTGGTACT 22843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | ||||| || ||||| |||||||| | ||||| | || | || | Sbjct 22175 AATGCAGATCTTTGTCAAGACATTGACTGGAAAGACCATCACACTGGAGGTCGAGGGATC 22234 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||||||| | || || |||||| ||||| || || || || |||||||| Sbjct 22235 TGATACCATCGACAATGTAAAGACCAAGATTCAAGACAAGGAGGGCATTCCACCCGATCA 22294 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| | ||||| | | ||| || |||||||| || | | | | ||||||||| Sbjct 22295 GCAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGACGGCCGCACTCTATCCGACTATAA 22354 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| || |||||| | || |||| || Sbjct 22355 CATTCAAAAGGAGTCTACTCTTCACTTGGTACT 22387 >seq420 Length=40905 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || || || |||||||| | ||||| | || | ||| | Sbjct 14002 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATCACACTGGAGGTCGAAGGATC 13943 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 ||||||||||| | || || ||||| ||||| ||||| || || |||||||| Sbjct 13942 AGACACCATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCA 13883 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||| | ||||| | | |||||| |||||||| |||| | | | | |||||| || Sbjct 13882 ACAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGCACTCTATCCGACTACAA 13823 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| | || |||| || | || | ||||||| Sbjct 13822 CATTCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGAGGAA 13773 Score = 98.7 bits (108), Expect = 1e-15 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 || || ||||||| | ||||| || ||||| ||||| || | ||||| | || | || Sbjct 14236 AATCATAATGCAAATCTTTGTCAAGACATTGACTGGCAAGACCATCACACTTGAGGTCGA 14177 Query 26822 A---TCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACC 26878 ||| ||||||||||| | ||||| ||||| ||||| ||||| || || Sbjct 14176 GGGCTCA---GACACCATCGACAACGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCC 14120 Query 26879 TCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG 26938 |||||||||||||||||||| | | || || ||||| || || | | | | | Sbjct 14119 ACCCGATCAACAAAGACTCATCTTTGCTGGAAAGCAACTAGAGGACGGACGTACCCTTTC 14060 Query 26939 CGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||| ||||||||||| || || ||| | || |||| || | || | ||||||| Sbjct 14059 CGACTACAACATTCAAAAGGAGTCCACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAA 14001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA---ATC 26824 |||||| | || || || || | |||||||| | || ||| | || | || ||| Sbjct 13546 AATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACCATTACCTTGGAGGTTGAGGGATC 13487 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||| | ||||| ||||| ||||| ||||| || || ||||| Sbjct 13486 A---GACACCATCGACAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGA 13430 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| |||| || | | ||||| ||||| || |||| | | | || ||||| Sbjct 13429 CCAGCAACGACTAATCTTTGCTGGCAAGCAACTTGAGGATGGCCGCACCCTCTCTGACTA 13370 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| |||||||| |||||| | ||| |||| || Sbjct 13369 CAACATACAAAAAGAGTCTACTCTTCATTTGGTTCT 13334 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| |||||| || || || || || || ||||||||| Sbjct 13713 GATACCATCGACAACGTCAAGACCAAGATTCAAGATAAGGAGGGTATTCCACCCGATCAA 13654 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | |||||| |||||||| |||| | | | || ||||| ||| Sbjct 13653 CAACGCCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAAC 13594 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || |||||||| |||||| | || |||| || | || | ||||||| Sbjct 13593 ATACAAAAAGAGTCTACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAA 13545 >seq2393 Length=1004 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 26863 ACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAG 26922 |||| ||||| || || ||||| |||||||||||||||| || ||| || |||||||||| Sbjct 1004 ACAAGGAAGGAATCCCACCCGACCAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAAG 945 Query 26923 ATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGA 26982 | | | | | | |||||| ||||||||||| ||||| || | ||| |||| || Sbjct 944 ACGGTCGCACTCTTTCCGACTACAACATTCAAAAGGAATCCACACTTCATTTGGTACTCC 885 Query 26983 GACTTAGAGGAGGAAAA 26999 | ||| | |||||| || Sbjct 884 GCCTTCGTGGAGGACAA 868 >seq1623 Length=5066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| | ||||| || | |||||| | || | || Sbjct 328 ATGCAAATCTTTGTTAAAACCCTGACTGGTAAGACCATCACCTTGGAGGTTGAGGGCTCT 269 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||||||| | || || ||||| ||||| ||||| || || ||||||||| Sbjct 268 GATACCATCGAGAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCCCCCGATCAA 209 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || || | | ||| || ||||| || |||| | | | | |||||| ||| Sbjct 208 CAACGTCTTATCTTTGCCGGAAAGCAACTTGAGGATGGTCGTACTCTTTCCGACTACAAC 149 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || |||||| | ||| |||| || Sbjct 148 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCT 117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478578604163600