Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq98 396 7e-105 seq404 342 1e-88 seq689 96.9 9e-15 >seq98 Length=772300 Score = 396 bits (438), Expect = 7e-105 Identities = 1351/2081 (65%), Gaps = 37/2081 (2%) Strand=Plus/Minus Query 363079 AAGGTTGTTCAGGGTCTATATGATGGTGTTACAACTGTTCAG--CTAGACAATCTTGCCG 363136 ||||| || | ||| | || ||||| || || || |||| || || || || || | Sbjct 409805 AAGGTAATTGAAGGTTTGTACGATGGGGTAACCACC--TCAGAACTGGATAACCTGGCTG 409748 Query 363137 TAGAAACTGCAACTTATCTGACCATGACGCATCCTGATTACTCCAAACTGGCTGCTCGCA 363196 ||||| ||| ||| ||||||| | |||||||||||| | | ||||| | || | Sbjct 409747 CGGAAACGGCAGCTTCGCTGACCACCAAGCATCCTGATTATGCATTATTGGCTTCCCGTA 409688 Query 363197 TTGCAGTTTCGTCTCTTCATAAAATGACATCAAATAAGTTTTCCAGTGTCATGGATAGTC 363256 |||| || || ||| || || | || | || || |||| |||||| | | Sbjct 409687 TTGCGGTATCTAATCTGCACAAGAACACCACGAAATCTTTCTCCAAAACCATGGAGATGC 409628 Query 363257 TGTATAACTATGTCAATACAAAGACCGGTAAGTGGTCACCACTCATTGCCGATGACATTA 363316 ||||||||||||| || | || || | || | | |||| ||||| || || || Sbjct 409627 TGTATAACTATGTGGATTCCAAAACAGACAAATCTGCTTCACTGATTGCAGACGATGTT- 409569 Query 363317 TTGAATGT-ATCCGTTCTAATGCGGAAGTTTTCGATGACGTTATCAATTATGAGAAGGAT 363375 | | | || ||| ||||| || || | || | || | |||||| | |||| Sbjct 409568 TGGGAGGTGATCAAAGAAAATGCAGAGATTCTGGACAGCACCATTATTTATGACAGGGAT 409509 Query 363376 CTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAAT 363435 | | | ||| ||| || | ||| || | || |||||||| || || | Sbjct 409508 TTTGGATTCGATTATTTTGGGTTTAAAACCCTTGAAAAATCCTATCTGCTGAAAATAGAA 409449 Query 363436 GGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGC 363495 || | ||||| ||||||||||| ||| |||| ||||||||||| | || || || Sbjct 409448 GGACAAATTGTAGAACGCCCGCAACATTTGTTTATGCGTGTTGCCGTAGGGATTCACAAA 409389 Query 363496 CCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCAC 363555 ||| |||| ||||||| ||| ||||| || | |||| || || ||||| Sbjct 409388 GAAGATATTGAAAGTGCGATTGCAACGTATAACCTGATGAGTGAGCGCTGGTTTACGCAT 409329 Query 363556 GCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTT 363615 || || ||||| | | ||||| | || | ||| || || |||||||| |||||| | Sbjct 409328 GCAACCCCAACTTTATTTAATGCAGCTACCCCTAAACCTCAAATGTCTTCCTGCTTTTTA 409269 Query 363616 CTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTT 363675 || | ||| ||||||| || || || || | || || | || | ||| Sbjct 409268 CTGACCATGCAGGACGACAGTATTGAAGGAATTTACGATACTTTAAAACAAACCGCTAAA 409209 Query 363676 ATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAG 363734 ||||| | | ||||| || |||||| || ||||| || | ||||| || | | Sbjct 409208 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATC- 409150 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 ||| ||| | || ||| || | |||||| | || || ||| | || ||| | Sbjct 409149 TTATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAA 409090 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 | |||| || | || || |||||||||||||| || || ||||| || ||||| || || Sbjct 409089 CGATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTA 409030 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAG-TTTCTTGAGCTCCGGAAAAACACGGGAA 363913 || ||||| ||||| ||| | |||| ||||| || || || |||||| || | Sbjct 409029 CCTGGAGCCATGGCATGCAGAT-GTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTA 408971 Query 363914 AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGA 363973 |||| ||| | ||||| | ||| | |||||||| |||||||| | ||||| || |||| Sbjct 408970 AAGAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGA 408911 Query 363974 AGCGCGTGGAGGCA---GGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTC 364030 | || || | | || || | ||| | || || || || ||| || || | Sbjct 408910 GAAGGGTAGAAGAAAACGG--AG-ACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGAC 408854 Query 364031 TTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAA 364090 | | ||| | |||| || | | |||| |||| || || ||| || ||| Sbjct 408853 TGGCAGATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGAC 408794 Query 364091 AGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTG 364150 || ||||| || ||| ||||| |||| ||||||||||| ||||||| ||||||| Sbjct 408793 GTGCCCGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTG 408734 Query 364151 AGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGC 364210 | || ||||| || ||| ||||||| |||||| | ||| |||| ||||||||||| Sbjct 408733 AAACCGGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAA 408674 Query 364211 ACCTTGGTACAATTCAGCAG-AGCAACCTATGTACCGAGATTATTGAATACACCGCTCCC 364269 | | || || | ||| || |||||| ||||| || ||||| || || || | Sbjct 408673 ATTTAGGAACCA-TCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAA 408615 Query 364270 GACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGATGGT 364329 |||||| ||| ||||||||||| || ||| | || | || ||||| | | || Sbjct 408614 GACGAGGTTGCTGTATGTAACCTGGCCTCGTTGGCTTTGCCAAGATTTGTCATCAACGGA 408555 Query 364330 ACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGACAAG 364389 ||||| || ||| | | ||||| ||||||||||| ||||| || || | || Sbjct 408554 GAGTTTGATCATCAGAAATTATATGATGTAACCTATCAGGCTACCCTGAACCTGAATAAA 408495 Query 364390 GTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGC 364449 |||| || | ||||||||||| | ||||| | ||| || ||||| || | Sbjct 408494 ATTATTGATCATAATTATTATCCGGTAGAGGAAGCTAAAAATTCCAACATGCGCCACAGA 408435 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || ||||| | ||||||||||| | || || | |||||| || | | ||||| Sbjct 408434 CCAGTTGGTTTAGGTGTACAGGGATTGGCAGATGCTTTTATCCTGATGCGTTTACCATTT 408375 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || | || || ||||||| || || |||||||| || ||||| || || Sbjct 408374 GAAAGTGAAGGGGCAAAAATTTTAAATAAAGAAATTTTTGAAACGATTTATTTCGCTGCC 408315 Query 364570 ATGACTGCTTCGTGTGATTTGGC--AAAAACCAAGGGAAAGTACTCTACTTATGAGGGGT 364627 ||||| || || ||| |||| |||| | || ||| |||| | || | Sbjct 408314 ATGACGGCCTCACATGACCTGGCTGTTAAAC--ATGGTCCTTACCAGACTTTCAAAGGTT 408257 Query 364628 CCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGT-CACGCCATCTG--TCC 364684 | || | || | || |||||||||||||| ||||||||||| || | | | || Sbjct 408256 CTCCATTGTCAGAAGGTAAATTCCAGTTTGACCTATGGAATGTACAACCAGACAGCAACC 408197 Query 364685 GATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCG 364744 | ||| ||||||| || | ||| || || || | || ||||||||| Sbjct 408196 GCTGGGACTGGGAAACATTGCGTGAAAAAGTAGTCAAAAACGGCGTGTACAACTCCCTGC 408137 Query 364745 TTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCG 364804 | ||||| ||||| |||||||| ||| | |||||||| || ||||| ||||| || | Sbjct 408136 TGGTGGCGCCAATGCCAACGGCTTCCACTTCTCAGATCCTGGGCAACAATGAGTGTTTTG 408077 Query 364805 AACCGTTTACA-AGCAATC-TTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGT 364862 | || ||||| ||| | ||||| | | |||| | |||||| ||| || || Sbjct 408076 AGCC--TTACACTTCAAACATTTATACCAGAAGGGTATTGAGCGGAGAGTTTATTGTCGT 408019 Query 364863 TAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGC----ATGA 364918 || ||| || | | || || || | || || | || |||| | |||| Sbjct 408018 GAACAAGCACTTGTTAAAAGACCTGGTGGCCCTAGGCTTATG----GACACCTGCGATGA 407963 Query 364919 AGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATC 364978 | || || || || || |||||| | ||| ||||| | | |||| || || Sbjct 407962 AAGACAGAATTATTCTGGCGAACGGTTCTATTCAGGACATTGCCGAGATTCCGGATTATA 407903 Query 364979 TGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGG 365038 | || | |||||||| || ||||||||| ||||| | ||||||||||||| | Sbjct 407902 TTAAAGAACTGTACAAAACAGTTTGGGAAATTAAAATGCGCAGCATCATTGATATGGCAG 407843 Query 365039 CCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAA 365098 |||| |||||||| | ||||| ||| || || | ||| | || || | | |||| Sbjct 407842 CCGACCGCGGTGCCTACATCTGCCAGTCGCAATCCCTGAACCTGTTTATCAATGCACCAA 407783 Query 365099 CCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | |||| || || || ||||||||||| | |||||| Sbjct 407782 ATACATCCAAACTGACTTCTATGCATTTCTATGCCTGGAAA 407742 >seq404 Length=78127 Score = 342 bits (378), Expect = 1e-88 Identities = 792/1183 (67%), Gaps = 53/1183 (4%) Strand=Plus/Minus Query 363379 GAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGT 363438 ||||| || |||| || | ||||| ||||| |||||| | || ||| | | Sbjct 49893 GAGTACGACTTTTTTGGCTTCAAGACCTTGGAGCGTTCCTACTTGCACCGCATCGACGAC 49834 Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 | || |||| || || ||||| ||| | |||||||| || |||||||||| || | Sbjct 49833 GTCATCATTGAGCGTCCCCAGCACATGCTCATGCGTGTCTCTCTTGGTATCCACGGCGCC 49774 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGC----TTCTAAGTGCTCGTGTATTCACGCA 363554 || |||| || || || || || ||| ||| ||| || ||| | || | || Sbjct 49773 GACATTGACGCTGCCATCGAGACCTATGAGCAGCTTTCCCAGCGCTACTTTA----CCCA 49718 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 |||||| ||||| | | || | || || | ||||| ||||| || ||||| || Sbjct 49717 CGCCACCCCAACCCTCTTTAACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCTTCCT 49658 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 | | | |||||||| || || ||||| ||||||| || || || ||| | || || || Sbjct 49657 TGTCCAGATGAAGGATGACTCGATCGATGGTATCTACGATACCCTCAAGCAATGCGCCCT 49598 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA--CAGAAC 363732 || |||||| || || || |||||| | | ||||||| | || || | | | Sbjct 49597 CATCTCCAAGTCGGCCGGAGGCATTGGTCTCGCTGTCCACAAGATCCGCGCTGCCCGTTC 49538 Query 363733 AGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTT 363791 | || || |||||||| || ||| || || || || |||||||||||||| ||||| Sbjct 49537 A--TATATCCGCGGCACCAACGG-TACATCCAACGGTCTCGTTCCCATGCTTCGCGTGTT 49481 Query 363792 TGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTAT 363851 || | ||||| | ||||||||||| || || || |||||||| || || ||||| || Sbjct 49480 CAACGACACTGCTCGCTACGTCGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTTTGCCAT 49421 Query 363852 GTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGG 363911 || |||||||| || |||||| | | ||||| ||||| || || || ||| || Sbjct 49420 CTACCTCGAGCCATGGCACGCCGATGTCATGGAGTTCCTTGACCTTCGCAAGAACCACGG 49361 Query 363912 AAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 ||| || || ||||||| ||||| || || || || || ||||| || || | ||||| Sbjct 49360 AAAGGAAGAGATGCGTGCCCGTGACCTCTTTTACGCCCTCTGGGTATCCGATCTCTTTAT 49301 Query 363972 GAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 | |||| || ||||| | ||| |||||||||| || |||| |||||||| Sbjct 49300 GGAGCGTGTCGAGGCCAACGCCGAGTGGACACTCTTTTGTCCCAACGAGGCCCCAGGTCT 49241 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGA----ATCGGAGG 364087 | ||| ||||| ||||| | ||||| ||| || || | | ||| Sbjct 49240 CGCTGATTGCTGGGGAGACGAGTTCCGCGCTCTCTACACCCGCTACGAGGCCACCCCAGG 49181 Query 364088 GAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGA 364147 || ||| ||||| || || || | || ||||| |||| || || ||||||| Sbjct 49180 TCTCGG-TCGCAAGACCATCAAGGCCCAAGATCTCTGGTTCTCCATTATCGAGTCGCAGA 49122 Query 364148 TTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGC 364207 ||||||| || || || ||||| | ||||| || | ||||| |||||| ||||| | Sbjct 49121 TTGAGACTGGCACCCCATATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAAACCAAC 49062 Query 364208 AGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTC 364267 || | || || || || ||| |||||| || || |||||| | |||||||| ||| Sbjct 49061 AGAATCTCGGCACCATCCAGTGCTCCAACCTCTGCACAGAGATTGTCCAATACACCTCTC 49002 Query 364268 CCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGT-------- 364319 ||||||| ||||| || ||||| || ||||| || || || |||||| Sbjct 49001 CCGACGAAGTGGCCGTGTGCAACCTCGCCTCGATTGCCCTACCCAAGTTTGTTGTGCCAG 48942 Query 364320 -AAAAGATG--GTAC-------TTTTGACCACCAGCATCTTTATGACGTAACC--TATCA 364367 || |||| || | ||| ||||||| ||||| | ||| | ||| ||||| Sbjct 48941 CCAAGGATGGCGTTCCCGCCCACTTTAACCACCAACATCTCTTTGAAATGACCTGTATCA 48882 Query 364368 TGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGA 364427 | ||| |||| ||| || | || ||| || || || || ||| || ||| Sbjct 48881 T--CACTCGCAACCTCAACCGCATCATTGACCGCAACTACTACCCTGTTCAAGAGGCC-- 48826 Query 364428 GCGT---TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGT 364484 ||| || || ||||||||||| || || ||| | ||| | || || ||||| ||||| Sbjct 48825 -CGTACCTCCAACATGCGTCATCGTCCAATCGGTATCGGTATCCAAGGTCTCGCCGACGT 48767 Query 364485 TTTTAT---GATGCTCAAGATGGCATTTGATTCGCCTGACGCT 364524 ||||| |||| ||| |||| |||||| ||| |||| Sbjct 48766 CTTTATCGCCATGC---GTATGCCATTCGATTCGACTGCCGCT 48727 >seq689 Length=46727 Score = 96.9 bits (106), Expect = 9e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAACGT 22494 ||||| ||||| || ||||| ||| |||||| ||| || || || || ||| Sbjct 18107 AAGAAGAAGGCTGACTGGGCATTGAGATGGATCTCAAATTCCAAGTCGTTTGCCGAGCGT 18166 Query 22495 CTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTT 22554 | | || ||||| | || || || || || || ||||| || ||| |||||||| Sbjct 18167 TTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGGTAGTTTCTGTTCAATCTTT 18226 Query 22555 TGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGA 22614 ||||| || || |||| | | ||||| ||| | || ||||| || ||||| || ||||| Sbjct 18227 TGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAACGAGTTGATCAGCCGT 18286 Query 22615 GATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATA 22652 || || ||| | || ||| ||||| ||| |||| || Sbjct 18287 GACGAAGGTTTGCACTGCGACTTTGCCTGTCTGCTCTA 18324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303119727451910