Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007497.1 Length=44856 Score E Sequences producing significant alignments: (Bits) Value seq215 125 2e-24 >seq215 Length=48791 Score = 125 bits (138), Expect = 2e-24 Identities = 593/923 (64%), Gaps = 28/923 (3%) Strand=Plus/Minus Query 27396 GTACTGGTTCGCCGGGTCGTTATAGCTGACGAGCGCGACCGTGTACCGCGTCTTACGCTC 27455 ||| | |||| ||||| || |||||||| ||||| ||| | | |||| | ||||| Sbjct 32276 GTAGTTGTTCAGCGGGTTGTCGTAGCTGACCAGCGC--CCGGGAATAGCGTGTG-CGCTC 32220 Query 27456 -GCTGC---CGACATACCGGAACGAGCCATCGATCACGTTCGCCGCCGTGTACACGTACA 27511 | ||| ||| ||| |||| ||||||||| ||||||||| ||||| || | Sbjct 32219 CGATGCGCTCGA-ATAGGTGAACTTGCCATCGATGACGTTCGCCCGGGTGTAGGCGAAGT 32161 Query 27512 CCGGATCTGA------CGGCATGTCCGCCGATGCGACGACAGCTCCCGGCCCCCAGTAGG 27565 | || | |||||| |||| | | || ||| ||| | |||| |||| Sbjct 32160 CGAAGTCAGTGGCGCGCGGCATATCCGACAGGGTGAAGACTTGGCCCTGGGCCCAATAGG 32101 Query 27566 CGATGCCGCGGAACACGCTCGCGATGTCCTGCAACACCTTGAACGCGTCGGCCGCCGACT 27625 ||||| ||| | | ||| |||||| ||| || | | || || ||| || Sbjct 32100 TCATGCCTCGGTAAATCGTCGAGATGTCGCGCAGCAGCGACCATGCATCCGCCTTGCTCT 32041 Query 27626 GGATCACG--CAGTT-GCAGGCGAATCGCGGCTCGACGCCGCCTTTTCCGTCCGACACCA 27682 | || | ||| | |||| ||| ||||| || ||| || || |||| || ||||| Sbjct 32040 G---CAAGTTCAGATCGCAGATGAAACGCGGTTCCTGGCCACCCTTCCCGTTCGGCACCA 31984 Query 27683 TCACATCGCAGTAGCGCGCGATTTCGTACAGCCCCCACTTGTCGATCATCGATGCATCGA 27742 || ||||||||| ||| || ||||||| |||||||||||| |||| | | | || Sbjct 31983 TCTGATCGCAGTACTGCGAAATGCGGTACAGCTCCCACTTGTCGACCATCCACGGCTTGA 31924 Query 27743 CGGTCTTTCCGAGCCCGTAGCGCTCGTTCAACAGCAGGTCGTAGAAGATCCACGCGGGAT 27802 | ||||| ||| |||| ||||| ||| | ||| ||| | || | Sbjct 31923 TGCGACGGCCGAGGCCGAAGCGGTCGTTTGTGGTTAGGCCATAGGTATGCCAGACAGGGT 31864 Query 27803 TGTTCGTCCATGCCGGTTTGAACGTGCCGTCCCACGTGCCCGAGTACGTGCGCGTCTCAG 27862 ||| ||||||||| ||||| ||||| ||||| ||| ||||| |||||| || Sbjct 31863 TGTCGGTCCATGCCTCCTTGAATGTGCCATCCCAAACGCCAGAGTAGCTGCGCGATCGAG 31804 Query 27863 GATCGTAGTTCGACGGCACACG-CACGATCAGACCTCGAACGTGGTACGAGCGCACCGGG 27921 | ||||| || |||||| | ||| | | | ||| | || | | ||||| Sbjct 31803 GGTCGTAATTGCTCGGCACCTGCCACTTGCGGCCGTCGCAATCAATA-GTGACTGCCGGG 31745 Query 27922 A-CCTGCGAGAAC-GAGCGCGCGTCGAACGTCATACCCACGAGCGCAGTCATCGGATAGC 27979 | ||||| |||| | || ||| ||| ||| || | ||| || | ||||| | Sbjct 31744 ATACTGCG-GAACTGCTCG-GCGGAAAACTCGATATACAACAACGCGGTGTTTGGATACC 31687 Query 27980 GCAGCTTGCGGTCGATGATTTCGGTGATCGCCTCGATGTTCACCGTGTCGGCGATCAGCG 28039 ||||||| |||||| | || |||| | |||| | || |||||||| ||| Sbjct 31686 GCAGCTTCGCGTCGATCACCTCAGTGAAGCCGGCGATCTGCATCGTGTCGGAGATTTTGT 31627 Query 28040 AGCTGTGCGCATTCGGCGTAATGCGCCGCACGCGCACCAGCCAGCCGGATTTCGCACTCG 28099 | ||| | || ||| | |||| | ||||| ||||||||| || | || ||| Sbjct 31626 TGTTGTTCTGGTTGATCGTCAGGCGCGTGATGCGCATCAGCCAGCCAGAAGTAGCCTTCG 31567 Query 28100 GCAGCTCGATCCGATGGGAACGCTCGTACAGCGACGTCGTCTTGCCGTCAAAGGCGCCGC 28159 ||| ||||| || ||| |||||||||| || ||||||||||| | || ||| Sbjct 31566 GCAAATCGATGCGGCGGGTGCGCTCGTACACGCTGGTGGTCTTGCCGTCGACAGCTTCGC 31507 Query 28160 GCAGCACTTCCGCGTACGAGCCCCCGTCAACCGACAGGTCAATCGCATACTCGACTCGGT 28219 |||||| | | ||| | || ||||| | ||| |||| | ||||||| ||||| Sbjct 31506 TCAGCACCTGCTGGTAAGCACCGCCGTCGGTTGCCAGCTCAACCTTGTACTCGATTCGGT 31447 Query 28220 AGCCGAACACGCCGGACGAC-GGGTCACTCTTCTGCAGCGCAGGCACGCCGAAGCGAATA 28278 | ||| | | | || | | ||| ||| ||||| ||| | ||||||||| | Sbjct 31446 ACCCGTTGATG-TTGCCGCCAGCGTCTACGGACTGGAGCGCTGGCCAGGCGAAGCGAACA 31388 Query 28279 CGGACTGCCGTGAGCTGCGTGTT 28301 || || |||| ||||| |||| Sbjct 31387 CGAACGGCCGAAAGCTGGTTGTT 31365 Score = 95.1 bits (104), Expect = 3e-15 Identities = 135/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 26213 CCGGATACCATGGCCCGACGTTTCCGGACGTGTCCACGAGGCGCGCCCAGAAGTAGAAC- 26271 ||||||| | || |||| ||| |||| |||||| ||||||||||||||| ||||| Sbjct 33441 CCGGATAGAACGGACCGATGTTGCCGGTGCGGTCCACCAGGCGCGCCCAGAAGAAGAACT 33382 Query 26272 ACCTGCCCGACCGCAAGCCCCTG-ATACGACGTGGAC-GCCTGCGGATACGCGAAATCCG 26329 | ||||| | || ||| ||| || || || | | |||||||| || || ||||||| Sbjct 33381 GCGCGCCCGCCAGC-AGCGACTGCATGCG--GTAGTCAGCCTGCGGGTATGCCAAATCCG 33325 Query 26330 AAAACTTCGTGGCGTCGTCGCGGCTCGGCGTCCGGCTGTACCAGATCTCGGTGCGCTGCG 26389 | |||||| ||| || || || | |||| || ||||||||| ||| || ||||| | Sbjct 33324 CCAGCTTCGTCGCGGCGCCGAGGTTGTTCGTCGGGTTGTACCAGAGCTCCGTCCGCTGGG 33265 Query 26390 TGTC 26393 | || Sbjct 33264 TATC 33261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143393748308580