Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007710.1 Length=46643 Score E Sequences producing significant alignments: (Bits) Value seq58 132 1e-26 seq1222 129 2e-25 >seq58 Length=338205 Score = 132 bits (146), Expect = 1e-26 Identities = 314/460 (68%), Gaps = 22/460 (5%) Strand=Plus/Plus Query 35441 TTGCAGGTGAAGTTGCTCGACCCGCGTTTCGGCGATCTGTGGCCGTTGCCGGCCTATGCC 35500 ||||| | ||| | |||||||| || ||||| | | ||| |||||||||| ||| Sbjct 259592 TTGCAAGCCAAGATCCTCGACCCCCGCATCGGCAACGAATTCCCGCTGCCGGCCTACGCC 259651 Query 35501 ACCGAAGCCAGTGCAGGCATGGACCTGCGTGCCGCACT---GGAGG-CGCCGATGACGTT 35556 || || | || ||| | |||||||||||| || | ||| | ||| || || Sbjct 259652 ACACCAGGCTCCGCCGGCCTCGACCTGCGTGCCATGCTCAAGCAGGACACCG-TGC--TT 259708 Query 35557 GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCTGGCCGACCCGCA 35616 | | || ||| | | |||||||| | |||| | ||||| | ||| ||||||| Sbjct 259709 GAA-CCAGGCCAGACCATTCTGATTCCGACCGGCCTGTCGATCTACGTGGGCGACCCGGG 259767 Query 35617 GCTGTGCGCGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACGGCATCGTACTCGG 35676 ||| ||| |||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct 259768 CCTGGCGGCGCTGATCCTGCCGCGCTCCGGCCTGGGCCACAAACACGGCATCGTCCTCGG 259827 Query 35677 CAAC--GGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTTGATCAGCACCTGG 35734 |||| ||| || || ||||| |||| |||||||| |||| || | | |||| Sbjct 259828 CAACCTGGT--GGGGCTGATCGACTCGGACTACCAGGGCGAGTTGATGGTGTCCTGCTGG 259885 Query 35735 AATCGCGGCCGCGAGGCCTTCACCATCGAGCCG--GGCGACCGGATTGCGCAGCTGGTGA 35792 || || |||| || |||| ||| |||| ||||| || ||||| || || ||| Sbjct 259886 AACCGTGGCCAGACCGCGTTCAATATC--GCCGTCGGCGAGCGCATTGCCCAACTCGTGC 259943 Query 35793 TCCTGCCGGTCGTGC--GCGTAGGCTTGCGAG-TGGTGGACACTTTCGTCGACAGCGCGC 35849 | | ||||| |||| ||| | ||| |||| |||| || |||| ||| | | Sbjct 259944 TGGTACCGGTGGTGCAGGCGCA--CTT-CGAGCTGGTCGAAGAGTTCGACGAAACACAAC 260000 Query 35850 GCGGCGCGGGTGGATTCGGTCACACCGGCGTGCGCTGACT 35889 ||||||| ||||| ||||| || ||||| | |||||| Sbjct 260001 GCGGCGCAGGTGGCTTCGGGCATTCCGGCAGCCACTGACT 260040 >seq1222 Length=32555 Score = 129 bits (142), Expect = 2e-25 Identities = 275/398 (69%), Gaps = 12/398 (3%) Strand=Plus/Plus Query 35487 TGCCGGCCTATGCCACCGAAGCCAGTGCAGGCATGGACCTGCGTGCC-GCACTGGAGGCG 35545 |||||||||| |||||| | ||| || ||| |||||||||| ||| ||| | || ||| Sbjct 27568 TGCCGGCCTACGCCACCCCGGGCAGCGCGGGCCTGGACCTGCGCGCCTGCA-TCGATGCG 27626 Query 35546 CCGATGACGTT-GCAGCCGGGCGATGCGGCGCTGATTCCCAGCGGCATCGCGATCCATCT 35604 || || || | | |||||| | | | | ||| ||||||| |||| | || ||||| | Sbjct 27627 CCCATCACCATCGAAGCCGGCC-AGACCGTGCTCATTCCCACCGGCCTGGCCATCCACAT 27685 Query 35605 GGCCGACCCGCAGCTGTGCG-CGGTGATCCTGCCGCGCTCGGGGCTTGGCCATCGTCACG 35663 | |||||| | | |||| | |||||||||||||| || | ||||| ||| Sbjct 27686 CGGCGACCCCTCG-TATGCGGCCATGATCCTGCCGCGCAGCGGCATGGGCCACAAGAACG 27744 Query 35664 GCATCGTACTCGGCAA--CGGTACCGGCCTCATCGATGCGGATTACCAGGGGTCGTTGTT 35721 ||||||| || || || |||| ||| | ||||| | ||||||||||| | || | Sbjct 27745 GCATCGTTCTGGGGAATCTGGTA--GGCTTGATCGACTCCGATTACCAGGGCCAGCTGAT 27802 Query 35722 GATCAGCACCTGGAATCGCGGCCGCGAG-GCCTTCACCATCGAGCCGGGCGACCGGATTG 35780 | | |||||||| || |||| ||| || ||||| ||| || || || | | Sbjct 27803 GGTATCGACCTGGAACCGGGGCC-AGAGCGCTTTCACGCTCGCCCCCATGGAGCGCCTGG 27861 Query 35781 CGCAGCTGGTGATCCTGCCGGTCGTGCGCGTAGGCTTGCGAGTGGTGGACACTTTCGTCG 35840 |||||||| | ||| ||||||| ||| || ||||| || || || |||| || Sbjct 27862 CGCAGCTGATTATCGTGCCGGTGCTGCAAGTGGGCTTTAACGTCGTCGAGGAATTCGGCG 27921 Query 35841 ACAGCGCGCGCGGCGCGGGTGGATTCGGTCACACCGGC 35878 |||||| ||||| | || || ||||| ||||||| Sbjct 27922 ACAGCGAACGCGGTGTTGGCGGTTTCGGCAGCACCGGC 27959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149111197285050