Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq215 221 3e-53 seq179 125 2e-24 >seq215 Length=48791 Score = 221 bits (244), Expect = 3e-53 Identities = 185/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29791 CGCGAGATCGCGGATCTTGTCGAGGCTCGCCACAACGACGTTGTCACGACCATCGAACGT 29850 || || ||||| ||||| |||||||| || |||||||| || |||| |||||||| ||| Sbjct 4293 CGGGAAATCGCCGATCTAGTCGAGGCCCGGCACAACGATGTAATCACCACCATCGAGCGT 4352 Query 29851 CTCTTCGACAAGGGGCTTTTACGATCAAGTCGTAAAACTCGCCGGGAGTCCACCGGTGGC 29910 || || | ||| ||||||||||||||| |||||||||||| || || ||||||| ||| Sbjct 4353 CTTTTTGCCAAAGGGCTTTTACGATCAGATCGTAAAACTCGGCGTGAAGCCACCGGCGGC 4412 Query 29911 CGTCCGATCGCTGTGTATGACCTGATCGAGAGGGATACTCACCTGGTCGTTGCTGGTTAC 29970 || ||||| | ||| || ||||||| |||| | ||||| || |||||||| ||||| ||| Sbjct 4413 CGACCGATTGATGTCTACGACCTGACCGAGCGTGATACGCATCTGGTCGTGGCTGGCTAC 4472 Query 29971 AGCGATGAGCATCGTGCCCGAGTGATCGACCGCTGGCAGCAGCTTGA 30017 ||||| ||||| || || ||||| ||||||||||||||| | || || Sbjct 4473 AGCGACGAGCACCGCGCACGAGTTATCGACCGCTGGCAGGAACTGGA 4519 >seq179 Length=18974 Score = 125 bits (138), Expect = 2e-24 Identities = 320/485 (66%), Gaps = 4/485 (1%) Strand=Plus/Plus Query 754 GCCATTTCAGGTCGCCATCCTGAACGCCATGGGTAACGACCTGATTCGGGTCGTAAACTT 813 ||| |||||| |||||| |||| || ||||| | |||| || || | || || | Sbjct 207 GCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAGGTGAATGT 266 Query 814 CGTGAAGTCGGCACGCATCGGCTACACGAAAATGCTGATGGCCAACATCGGCTACAAGAT 873 |||||||| || || |||| || | ||||||||| ||| | |||| || Sbjct 267 GGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCCTACTTTAT 326 Query 874 TCAGCACAAGCGCCGTAATGTGCTGATGTGGAGCCCGACTGACCCAGACGCCGAGGGGAT 933 |||| |||| || || || || ||| ||||| || || |||||| | Sbjct 327 AGAGCATAAGCAGCGCAACACACTTATCTGGTTGCCGACGGATGGTGATGCCGAGAACTT 386 Query 934 CAGCAAGAGCCACGTTAAT--GGCCTGATTCGCGATGTTCCGGTGCTGCTGGCGCTGGCC 991 | || | ||||||| | | || || |||||| ||||| ||||||||||||||| Sbjct 387 TATGAAAACCCACGTTGAGCCGACC--ATCCGCGATATTCCGTCGCTGCTGGCGCTGGCT 444 Query 992 CCATGGTATGGCCGCAAGCATAGCGACAACACGCTCGACACCAAGGTGTTTGCAAACCGG 1051 || ||||||||| ||||| | || ||||||||| | ||| ||| | || | Sbjct 445 CCGTGGTATGGCAAAAAGCACCGGGATAACACGCTCACTATGAAGCGTTTTTCCAATGGT 504 Query 1052 CGGACCCTTTGGACGCTCGGCGGCAAGGCTGCTCGCAACTACCGTGAGAGATCTGCCGAC 1111 || | | ||| || ||||| || || || ||||||||||| | || | || Sbjct 505 CGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAAGTCGGTGGAT 564 Query 1112 GAGGTGATCTATGACGAGCTGTCGAAGTTCGACGCCGATATTGAAGGTGAAGGTTCCCCA 1171 | || | ||||| || || | || || | ||||||||| ||||| || || Sbjct 565 GTGGCGGGTTATGATGAACTTGCTGCCTTTGATGAGGATATTGAACAGGAAGGCTCTCCG 624 Query 1172 ACGTTCCTTGGCGACCAACGTCTGCGCGGTGCTGTTTACCCGAAGTCCATCCGTGGATCG 1231 ||||||||||||||| ||||| | || | || | || |||||||||||||| || Sbjct 625 ACGTTCCTTGGCGACAAACGTATTGAAGGCTCGGTCTGGCCAAAGTCCATCCGTGGCTCC 684 Query 1232 ACGCC 1236 ||||| Sbjct 685 ACGCC 689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125294358907410