Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq48 114 1e-20 seq420 113 4e-20 seq79 109 5e-19 seq456 100 3e-16 seq593 98.7 9e-16 seq1623 95.1 1e-14 seq689 93.3 4e-14 seq1674 84.2 2e-11 >seq48 Length=44992 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || |||||||||||||||||||| ||| | Sbjct 22630 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 22571 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| || |||| | | || || || || ||| Sbjct 22570 AATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 22511 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || || | | ||||| Sbjct 22510 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACT 22451 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | || || || || ||||| || ||||||||||||||| Sbjct 22450 TCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || |||||||||||||||||||| || Sbjct 22858 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 22799 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || | ||| || || || || ||| Sbjct 22798 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGG 22739 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||||| | || | ||||| | ||| | Sbjct 22738 ATTCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACC 22679 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || ||||| ||||||||||||||||| Sbjct 22678 TCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || ||||||||||| |||||||| ||| Sbjct 22174 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGAT 22115 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || |||||||| ||| | || | ||| || || || || ||| Sbjct 22114 AGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGG 22055 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | ||||| | ||||| Sbjct 22054 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACC 21995 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | ||| || || || | || ||||||||||| ||||||| Sbjct 21994 TCAAGTGTGATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCATGA 21946 >seq420 Length=40905 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || ||||| ||||| |||||||| || Sbjct 13319 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAG 13378 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| || |||||||| || |||||| || |||||||| || ||| Sbjct 13379 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGG 13438 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | || || | ||| | Sbjct 13439 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACC 13498 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || ||||| || |||||||||||||| Sbjct 13499 TCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || |||||||||||||||||||| ||| Sbjct 13775 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13834 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| || |||||||| || |||| | ||| || || || || ||| Sbjct 13835 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 13894 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | || | || || | |||| Sbjct 13895 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACC 13954 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | ||| || |||||||||||||| Sbjct 13955 TCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 >seq79 Length=127859 Score = 109 bits (120), Expect = 5e-19 Identities = 153/214 (71%), Gaps = 3/214 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || ||||||||||| ||||||||||| Sbjct 118848 CCTCCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAA 118789 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| | |||||||| ||| |||| ||||| ||||| || || ||| Sbjct 118788 AGGGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGG 118729 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | ||||||| ||| | Sbjct 118728 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACC 118669 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTA 131221 |||| ||||| ||| ||||| |||||| |||| Sbjct 118668 TCGAGGGTAATGGTCTTACC---TAGAGTATTTA 118638 >seq456 Length=67341 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || || || | || ||||||||||| ||||||||||| Sbjct 21356 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAA 21415 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| | ||||| || || |||| ||||| ||||| || || ||| Sbjct 21416 AGGGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGG 21475 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | ||| | || || | ||| | Sbjct 21476 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACC 21535 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || || |||| ||| || || || ||||||||| Sbjct 21536 TCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTAACAAAGATCTGCATG 21583 >seq593 Length=58250 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | ||| |||||||||||||||||||| ||| Sbjct 29831 CCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAA 29772 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || || |||| | ||| || || || || ||| Sbjct 29771 AGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29712 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || || | | ||||| Sbjct 29711 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACC 29652 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || || ||||| ||||| || || ||||| Sbjct 29651 TCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || ||||| | || |||||||||||||||||||| || | |||||| Sbjct 29135 CGGAGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCA 29076 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| || ||||| || || |||| | ||| || || || || || |||||||| ||| Sbjct 29075 TCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTG 29016 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | || | || || | ||| | || | ||| | | Sbjct 29015 TCTTGGATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATG 28956 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || ||||| ||||| || || ||||| Sbjct 28955 GTCTTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 >seq1623 Length=5066 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || ||||||||||| |||||||| ||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| || ||||| || || |||| | ||| || || || || ||| Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||| | | ||| | ||||| | | ||| | Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACC 281 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| ||||| || || ||||| || || || ||||| Sbjct 282 TCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq689 Length=46727 Score = 93.3 bits (102), Expect = 4e-14 Identities = 288/438 (66%), Gaps = 11/438 (3%) Strand=Plus/Plus Query 46147 TTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTT 46206 || ||||||||| ||||||| ||||| || ||||| ||||||| ||||| ||||| Sbjct 18155 TTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTTTTCTCTGGTAGTTTC 18214 Query 46207 GCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAG 46266 | ||||||| |||| | || | ||||| || |||| ||| ||||||| Sbjct 18215 TGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTGACCTTTTCCAACGAG 18274 Query 46267 CTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGC 46326 |||| || ||||| || |||| |||||||| ||||| ||| | || | | Sbjct 18275 TTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGCCTGTCTGCTCTACACCAAGCTC 18334 Query 46327 GTGCACGACAAGCTTG-CGCCC-GAC-ACCGTGCTGAGCATGTTCAAGGAGGCGGTGGCC 46383 || | ||||||| | |||| ||| | || | || ||| | || || || | | Sbjct 18335 GT---CAACAAGCTCGACGCCAAGACCATCGAGTCGATCATCCGC---GACGCCGTCGAC 18388 Query 46384 ATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAG 46443 ||||||||||||| | || | |||| |||| | || | ||||||||| | Sbjct 18389 TGTGAGAAGGAGTTTGTCACCGAGTCACTTCCCGTCGATCTCATTGGCATGAACAGTCGT 18448 Query 46444 TCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGCCG 46503 | |||| | | ||||| |||||| || ||||| || ||||| | | || | | Sbjct 18449 GCCATGTCCCAATACATTGAGTTTTGCGCCGACCGTCTACTCGT-CGCCCTCGGCTACAA 18507 Query 46504 AAGCATTTTC-ACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAA 46562 || || | | || | ||| ||||| || | ||| | | ||||| || || |||| Sbjct 18508 AAAGATCTACAACTCTGCCAACCCATTCGACTGGATGGAGATGATCTCGTTGCAGCGCAA 18567 Query 46563 AACTAATTTTTTCGAAAA 46580 || || ||||||||||| Sbjct 18568 GACCAACTTTTTCGAAAA 18585 >seq1674 Length=6646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || ||||||||||| ||||||||||| Sbjct 149 CCTCCACGGAGACGGAGAACCAAATGGAGAGTGGACTCCTTTTGGATGTTGTAATCCGAA 90 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || ||||| || ||| | || | ||| || || || || ||| Sbjct 89 AGGGTACGTCCGTCCTCGAGTTGCTTTCCGGCGAAAATAAGACGTTGTTGATCGGGGGGG 30 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 29 ATTCCTTCCTTGTC 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471930168259200