Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008202.2 Length=42289 Score E Sequences producing significant alignments: (Bits) Value seq5284 93.3 1e-14 >seq5284 Length=2092 Score = 93.3 bits (102), Expect = 1e-14 Identities = 207/306 (68%), Gaps = 11/306 (4%) Strand=Plus/Minus Query 23926 CGTCCGGGTTCGGAGCTCGCTGGGGAACACAGCACCGCGGGCTCGACTTCGCCGCCAAGG 23985 ||||| |||||| ||||||||||||| | ||| || |||||||||||| | | Sbjct 1250 CGTCCCCGTTCGGGCCTCGCTGGGGAACCGAACACAAAGGCGTCGACTTCGCCGGCCCCG 1191 Query 23986 ACGGAACGCCGATCTATGCGGCGCAGGCCGGCACCGTGGCCTATATCGGGCCGGCGCAAG 24045 ||| || |||||||| ||||| | | |||| || || | | |||||| || | Sbjct 1190 TCGGGACACCGATCTACGCGGCACTCGACGGCGTCGCGGTCAAGGCCGGGCCCGCATCCG 1131 Query 24046 GCTTCGGGCAATGGATCGTGATTGACCACCCGGCCGCGGACGGC---GCCGGCACAACTG 24102 | |||||| | ||||||||| | | || || || |||||| | | | || | Sbjct 1130 GGTTCGGGAACTGGATCGTGCT---CGACTCGCTCGTCGACGGCAAACCTGTGAGCACCG 1074 Query 24103 TCTACGGGCACATGTGGAACG-CGTTCGCGACCGGGCTCAAGGCCGGCGATCGCGTCCAG 24161 ||||||| ||||||| ||| || | | || | ||| || ||| | | ||| || Sbjct 1073 TCTACGGCCACATGTTCGACGACG---GTGTCCTCG-TCACGGAAGGCCAGCAGGTCAAG 1018 Query 24162 GCCGGCCAACTCATTGCCTACGTCGGCGCCAACGGGCAGTCGACGGGCCCGCACCTGCAC 24221 |||||| | | ||| || || |||| |||||| || || || ||| | ||| |||| Sbjct 1017 GCCGGCGACCACATCGCGAACATCGGAAACAACGGCCAATCCACCGGCGCACACTTGCAT 958 Query 24222 TTCGAA 24227 |||||| Sbjct 957 TTCGAA 952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135180714440310