Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq98 291 1e-73 seq531 156 5e-33 seq404 125 9e-24 >seq98 Length=772300 Score = 291 bits (322), Expect = 1e-73 Identities = 810/1225 (66%), Gaps = 28/1225 (2%) Strand=Plus/Plus Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA--TCTTGCGCTTCCAGGCTAT 62540 ||| || ||||||| ||||| || || | ||||||| | | |||| | | || || | Sbjct 408316 GCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTTTTGCCCCTTCA--CTTT 408373 Query 62541 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 ||||||| || | || ||||| || ||||| ||||| || ||||| | ||| | | Sbjct 408374 CAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTACACCTAAACCAACTG 408433 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62660 |||| || | | | || || ||| |||||| | |||||||||||| ||| |||| Sbjct 408434 GTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAATAATTATGATCAATAA 408493 Query 62661 TTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62720 ||||||| || || | | | | ||||| | | ||| || |||||| Sbjct 408494 TTTTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATTTCTGATGATCAAACT 408553 Query 62721 GCCCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCAT 62780 || | || ||||| | ||| || | || ||||| ||||| || || ||||| | Sbjct 408554 CTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCCAGGTTACATACAGCAACCTCGT 408613 Query 62781 --TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 62838 | | | | ||| | ||| || || || ||||| || || |||||||||||||| Sbjct 408614 CTTTGGAA--GTATACTCTATAATTTCTGTACAAAGGTTGGAACTTTTGATGGTTCCTAA 408671 Query 62839 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 62898 |||||| || || || |||| ||||| ||||| | | | || || || || Sbjct 408672 ATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATACAACAGATAAGGGGTTCCGGT 408731 Query 62899 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTT--- 62955 ||||||||| || || | ||| || ||| | || | || |||| || | ||| Sbjct 408732 TTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGTGC-TTTA--ATGGTTTTACG 408788 Query 62956 -GTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACAT 63014 | | || || || ||||||| | ||| || ||||| || | || || || Sbjct 408789 GGCACGTCCTT-CTTTTTCGTAACGCTCATATAAAGCATCGAATTCTGCACCA-AAGCAA 408846 Query 63015 TGT-CCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63073 | | ||||||| || ||||| ||||| | || ||| ||||||| || | || Sbjct 408847 TCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAGTCTCCGTTTTCTTCTACC 408906 Query 63074 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTC 63132 | | |||| || || ||| | |||||| || ||| |||| |||||||| | | |||| Sbjct 408907 CTTCTCATGAACAGGTCACATACCCAAAGGGC-ATAGAATAAATCTCTGGCACGAAGTTC 408965 Query 63133 CTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || |||||| || || || || || | ||| | |||||| || Sbjct 408966 TTCTTTACC---ATGGTTTTTACGCAGGTCCAGAAAACTCAGCACATCTGCATGCCATGG 409022 Query 63190 TTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGC 63249 |||| ||| ||||| | | | || ||||| ||| ||||| || | || | || Sbjct 409023 CTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGGTCCACATAACGGGC 409082 Query 63250 GGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGA 63309 ||| | ||| | ||| ||||||| || | ||| |||||| || || || || || Sbjct 409083 GGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTCCCGTTTGTTCCACC 409142 Query 63310 GATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTT 63369 ||||| ||| ||||||| || ||| || || ||| || || ||||| ||| Sbjct 409143 AATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATACCACCTGCGCTTTG 409202 Query 63370 AGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCAT 63429 || ||| ||| | ||||||| ||||| || || || || ||||| || ||| ||| Sbjct 409203 TGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATACTGTCGTCCTGCAT 409262 Query 63430 GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGG 63489 | | |||| ||| ||| ||||||||| | | || | ||||||||||| || || Sbjct 409263 GGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCATTAAATAAAGTTGG 409322 Query 63490 AGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTAT 63549 | || || |||||||| ||| | || || ||||| |||| || || || Sbjct 409323 GGTTGCATGCGTAAACCAGCGCTCACTCATCAGGTTATACGTTGCAATCGCACTTTCAAT 409382 Query 63550 ATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGAT 63609 ||| || ||||| ||||| || |||||||| |||| || || || | ||| || || Sbjct 409383 ATCTTCTTTGTGAATCCCTACGGCAACACGCATAAACAAATGTTGCGGGCGTTCTACAAT 409442 Query 63610 CTTGTTGTT-TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGT 63668 |||| || |||||||| || ||||||||||| | |||||||| |||||||| | | Sbjct 409443 -TTGTCCTTCTATTTTCAGCAGATAGGATTTTTCAAGGGTTTTAAACCCAAAATAATCGA 409501 Query 63669 ATGAAAAGTCTCGTTCGTAAATAAT 63693 || ||| || | || |||||||| Sbjct 409502 ATCCAAAATCCCTGTCATAAATAAT 409526 Score = 219 bits (242), Expect = 5e-52 Identities = 579/877 (66%), Gaps = 9/877 (1%) Strand=Plus/Plus Query 32368 TTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATAT 32427 ||||||| || |||||||||||||| || || ||||| ||||| |||| | || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 32428 TTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAA 32487 | ||||| ||||| || |||||||| ||| ||| ||||| || | |||| ||| | Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 | |||| ||||| ||||| || ||||| | ||||| || |||||| || || | Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | ||| || | || | |||| |||||| | ||| || |||||||| |||| Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 | || ||| | ||| || || | |||| | | || || || | Sbjct 410340 TTCCATGAACGACTTCCTGGCTCAGTTTATTTTTGAGCATTTTATAAAGCAGGCAGGCAA 410399 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | || || || | ||||| ||||| ||| || || || ||| || || || |||| Sbjct 410400 ATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCTGGCA 410459 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATTCCT 32786 | ||||| | ||||| | ||| || || || || | | ||| | |||||||| ||| Sbjct 410460 TCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCT 410518 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 32846 || ||||| || || || | | | || || || ||| ||| ||||| Sbjct 410519 TCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA---ATCCAGCGC 410575 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || || || || ||||||||||| | ||||||| |||| || || | Sbjct 410576 AATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAACAGCCTG 410635 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | |||||| | | |||||||| ||| ||||| |||| || ||| |||| || || Sbjct 410636 TCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGG 410695 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 |||||||| || || || || || || || || | || |||| || ||||||||| Sbjct 410696 ATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTGTACTTC- 410754 Query 33027 GTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 | || | ||| |||| | |||||||| || || |||||||| || |||||||| | Sbjct 410755 GCTCATGA-AGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAAAAAAG 410813 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATAT 33144 | | || ||| || |||| ||| ||| ||| || | ||| | || | Sbjct 410814 CAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGT 410873 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | ||| | || | |||||| | ||||| || ||| || ||| |||||||| | Sbjct 410874 CATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTCTTATACATTT 410933 Query 33205 TCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 33241 |||||| ||| | |||| ||| || |||| |||||| Sbjct 410934 CCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAA 410970 >seq531 Length=89189 Score = 156 bits (172), Expect = 5e-33 Identities = 209/291 (72%), Gaps = 0/291 (0%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| || || || || |||| ||| || || | ||| || | ||||| || | || Sbjct 87868 ACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAG 87927 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 || ||||| | |||||| || || ||||| ||||| || || |||||| || || Sbjct 87928 ACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAAA 87987 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| ||||| ||||| || | ||||||||| || | || || | ||| Sbjct 87988 GATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGTTGTTTAT 88047 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 ||| |||||||||| ||||||||||| ||||| || ||||||||||||||||| || Sbjct 88048 CCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATTGAA 88107 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 | | | | |||||| ||||||||| ||||||||| ||||| ||||| Sbjct 88108 TAACTTGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACT 88158 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 ||||| | || |||||||||||||||||||| |||||||| | ||||||| ||| |||| Sbjct 88220 CTATAAGTCTCTGAATGAATGTTTTCAATGGCAATTTGAAAGCTGTAGAAGGATCGAGCC 88279 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 || | || || ||||| | || || ||||| ||||||||| || || || ||| Sbjct 88280 TCTGGTATTTGGACTTCAGCCATGAAGCGAGTTGCTAGATTTTCATTTACAATGCCATCA 88339 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC 33112 ||| ||||| || || | |||||||||||||| | | |||| Sbjct 88340 GAGGCAGCAAAGAATGCAAGCACATGTTTTATAAAGTGTCTTTC 88383 Score = 91.5 bits (100), Expect = 2e-13 Identities = 94/122 (77%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 33127 TATTCCAAT-CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 |||||| || ||| |||||||| |||| ||| | || | | ||||| ||||||||| Sbjct 88479 TATTCCCATTCATAGATATCTTGTGATAGATCGATATCATTAGCAGTCCAGAATGATGCC 88538 Query 33186 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 33245 ||||| ||||||||| ||||| ||||| | |||| |||||||| | ||||||||| Sbjct 88539 TCTGCAGATTTATACATCTTCCAAATGTCTGGGTATTTGATTGGAAACAGAACAAATCTG 88598 Query 33246 TT 33247 || Sbjct 88599 TT 88600 >seq404 Length=78127 Score = 125 bits (138), Expect = 9e-24 Identities = 572/899 (64%), Gaps = 15/899 (2%) Strand=Plus/Plus Query 62792 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 62851 ||||| | ||||| ||||| || || |||| |||||| || | ||| ||||| || Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 62852 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGAT 62911 ||| || || || ||||| || || || |||| || ||||| |||||||| || Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 62912 TCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA----GATTTGTATCTCTTTTC 62967 || ||||| | ||||| || | ||||| || | || | || | Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGGTG 49189 Query 62968 TCTTTCGTATAGTGTATACA-ATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAG 63026 | | |||| | || || | | || ||||||||||||||| || | || || | Sbjct 49190 GCCT-CGTAGCGGGTGTAGAGAGCGCG-GAACTCGTCTCCCCAGCAATCAGCGAGACCTG 49247 Query 63027 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 63086 | || | ||||| | | | |||||| ||| ||| || || | |||||||| Sbjct 49248 GGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAAAGA 49307 Query 63087 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 63146 |||| | | ||| || || ||| || || | || | || || ||||| | Sbjct 49308 GATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGTGGT 49367 Query 63147 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCA 63206 |||| ||| || |||||| |||| | ||| | ||||| || || | ||| ||||| | Sbjct 49368 TCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGGCAA 49427 Query 63207 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 63266 |||| || ||| ||||| || || | ||| | ||| |||| || | || | Sbjct 49428 AGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACACGC 49487 Query 63267 TCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGG 63326 | ||| |||| | ||| ||||||||||| ||||| || |||||| | || || Sbjct 49488 GAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATA---TGAACGGG 49544 Query 63327 CA---CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63383 || || || || | | ||||| || || || ||| || ||||| | |||| Sbjct 49545 CAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGGCGC 49604 Query 63384 ATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAAC 63443 || | || | ||||| ||||| || || || |||||| |||| | | || || | Sbjct 49605 ATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACAAGGAAGC 49664 Query 63444 AGCTAGACATTTGGTGACGA-CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTA 63502 | ||||||| ||| ||| | || |||| ||||| | ||| || | ||||| ||| Sbjct 49665 ACGACGACATTT-GTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGGGTA 49723 Query 63503 AACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGA 63562 || | | ||||| | | || ||||| || || | ||| || || || Sbjct 49724 AAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCGTGG 49783 Query 63563 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 63622 || || | | ||||||||| | ||||||||| || | |||| ||| || || || Sbjct 49784 ATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTCGATG 49843 Query 63623 TTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63681 ||||||||| ||||| || || || |||||| ||| ||| |||||| || Sbjct 49844 CGGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAAAAAGTCGTACTCAAAGTCACG 49902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633521074798000