Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq420 125 6e-24 seq593 120 3e-22 seq355 102 7e-17 seq48 102 7e-17 >seq420 Length=40905 Score = 125 bits (138), Expect = 6e-24 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||||||||| || || |||||||| | || || || || Sbjct 14002 AATGCAGATTTTCGTCAAGACTTTGACTGGAAAGACCATCACACTGGAGGTCGAAGGATC 13943 Query 25058 TGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| || ||| ||||| ||||| || ||||| || Sbjct 13942 AGACACCATCGA--CAATGTAAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGAT 13885 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || ||||||||||| ||| | || |||| ||||||| | ||| ||| Sbjct 13884 CAACAACGTCTCATCTTTGCCGGCAAGCAACTCGAGGATGGTCGCACTCTATCCGACTAC 13825 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || |||||||| || ||||| || || || || || | || | ||||||| Sbjct 13824 AACATTCAAAAGGAGTCCACTCTTCACTTGGTTCTCCGTCTCCGTGGAGGAA 13773 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||| | || || || | || || | || || ||| || Sbjct 13774 AATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATTACCTTGGAGGTTGAGGGATC 13715 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| || ||||| | ||| | || | ||| || || || || |||||||| || | Sbjct 13714 TGATACCATCGACAACGTCAAGACCAAGATTCAA-GATAAGGAGGGTATTCCACCCGATC 13656 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || |||| ||||||||||| ||| | || |||| ||||| | || |||| Sbjct 13655 AACAACGCCTTATCTTTGCCGGCAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACA 13596 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || |||||||| || || || || || || || | || | ||||||| Sbjct 13595 ACATACAAAAAGAGTCTACTCTTCACTTGGTACTCCGTCTCCGTGGAGGAA 13545 >seq593 Length=58250 Score = 120 bits (132), Expect = 3e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || ||||| ||||||| | || || ||| ||| Sbjct 28921 ATGCAAATCTTTGTAAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTTGAGGGATCT 28980 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| || ||| ||||| ||||| |||||||| || || Sbjct 28981 GACACCATCGA-TAACGTAAAGACCAAGATCCAAGACAAGGAAGGAATTCCACCCGATCA 29039 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || |||||||| || ||| | || |||| ||||| | || ||||| Sbjct 29040 ACAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTACAA 29099 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||||| || || Sbjct 29100 CATTCAAAAGGAGTCTACTCTTCATTTGGTACT 29132 Score = 118 bits (130), Expect = 9e-22 Identities = 158/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||||||||| ||||| || || ||||||| | ||||| ||| ||| Sbjct 29149 ATGCAAATCTTTGTAAAGACCTTGACTGGAAAGACCATCACCCTGGAAGTTGAGGGATCT 29208 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| || ||||| || Sbjct 29209 GACACCATCGA--CAATGTCAAGACCAAGATTCA-AGACAAGGAAGGAATCCCACCCGAT 29265 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| || | || |||||||| || ||| | || |||| ||||| | || ||| Sbjct 29266 CAACAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCTGACTAC 29325 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || |||||||| ||||| || || || || || || Sbjct 29326 AACATTCAAAAGGAATCTACTCTTCACTTGGTACT 29360 Score = 118 bits (130), Expect = 9e-22 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||||||||| | || || || | || || | ||||| ||| ||| Sbjct 29377 ATGCAAATATTTGTAAAGACCCTCACTGGCAAGACTATTACTTTGGAAGTCGAGGGATCT 29436 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || ||| | || | ||| ||||| ||||| |||||||| || Sbjct 29437 GACACCATCGA--CAATGTTAAGACCAAGATTCA-AGACAAGGAAGGAATTCCACCCGAT 29493 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| ||||| || ||| | || |||| ||||| | ||| ||| Sbjct 29494 CAACAAAGACTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGCACCCTCTCCGACTAC 29553 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||| ||||| || || ||||| || || | ||| | ||||| Sbjct 29554 AACATTCAAAAGGAATCTACTCTCCATTTGGTTCTTCGTCTACGTGGAGG 29603 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||||||| | || || || | || || | || || ||| ||| Sbjct 29605 ATGCAAATCTTTGTAAAGACTCTTACTGGCAAGACTATTACCTTGGAGGTCGAGGGCTCT 29664 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || || ||||| || ||| Sbjct 29665 GACACCATCGATAATGTCAAGACCAAGATCCAGGACAAGGAGGGAATCCCACCCGATCAA 29724 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | || |||| ||| ||| | ||| ||||| Sbjct 29725 CAACGTCTCATCTTTGCCGGAAAGCAACTCGAGGATGGTCGTACTCTTTCCGACTACAAC 29784 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| || || || || ||||| || || Sbjct 29785 ATTCAAAAGGAGTCAACCCTCCATTTGGTTCT 29816 >seq355 Length=81473 Score = 102 bits (112), Expect = 7e-17 Identities = 144/200 (72%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 24982 TTGTACAA-AACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACA 25040 || ||||| ||| ||| |||||||| ||||||||||| || || || || |||||||| Sbjct 81276 TTATACAACAAC--AACTATGCAAATCTTTGTAAAGACATTAACTGGCAAGACCATCACA 81333 Query 25041 GTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAA 25100 | || || || |||||||||||||| | ||| || ||| ||||| ||| Sbjct 81334 CTAGAGGTCGAAGGATCTGACACTATCGACAACGTCAAGACCAAGATCCAAGACAAGGAA 81393 Query 25101 GGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGC 25160 || || ||||| || || || || |||| |||||||| || ||| | || |||| ||| Sbjct 81394 GGAATCCCACCCGATCAGCAACGTCTTATCTTTGCCGGAAAGCAACTCGAGGATGGTCGT 81453 Query 25161 ACTGTGGGCGATTACAATAT 25180 ||| | ||| ||||| || Sbjct 81454 ACTCTTTCCGACTACAACAT 81473 >seq48 Length=44992 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | || || || | ||||| | ||||| ||| || Sbjct 22404 ATGCAGATTTTCGTCAAGACTCTCACTGGCAAGACTATCACCTTGGAAGTCGAGGGCTCA 22463 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| || ||||| || ||| Sbjct 22464 GACACCATCGATAATGTCAAGACCAAGATCCAAGACAAGGAAGGAATCCCACCCGATCAA 22523 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || ||||||||||| || | || |||| |||||| || ||| ||||| Sbjct 22524 CAAAGACTCATCTTTGCCGGCAAGCAGCTCGAGGATGGTCGCACATTGTCCGACTACAAC 22583 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || || || ||||| || || | || | ||||||| Sbjct 22584 ATTCAAAAGGAGTCTACTCTTCATTTGGTTCTCCGTCTCCGTGGAGGAA 22632 Score = 86.0 bits (94), Expect = 5e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || | | ||| ||| ||||| || || || ||||| | || || ||| ||| Sbjct 15455 ATGCAGATCTATATAAGGACATTGACTGGAAATACCTTCACATTAGAGGTCGAGGGATCT 15514 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| || | ||| || || ||||||||||| || || |||||||| Sbjct 15515 GATACCATCGAGACAGTAAAGTCCAAGATTGAAGACAAAGAAGGAGTTTCAGCTGACCAA 15574 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| || | |||| || ||| ||| | || ||||| ||||| Sbjct 15575 CAGCGTCTTGTCTTTGACGACAAGCAACTCGAGGATGACTGCACT 15619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433254037004075