Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq383 89.7 6e-13 >seq383 Length=340782 Score = 89.7 bits (98), Expect = 6e-13 Identities = 176/255 (69%), Gaps = 4/255 (2%) Strand=Plus/Minus Query 107552 CGAGAAACAAGTATATCGCATTGACCATTATCTCGGTAAAGATACTGTCAATAACATTCT 107611 ||| |||||| | || | ||||||||||| || || ||||| || ||| | |||||| | Sbjct 241814 CGAAAAACAAATTTACAGGATTGACCATTACCTGGGCAAAGAAACCGTCCAGAACATTAT 241755 Query 107612 TGCTACTCGCTTCAGCAACAT-TCTTCTTGAACCACTTTGGAACAGGCAGTATGTAGAAG 107670 || || || |||| | ||| || ||||| || ||||||||| ||| | || Sbjct 241754 GGC-CTTCCGTTTTGCAAATTCTCTACTGGAACCGCTCTGGAACAGGACTTATATTGACC 241696 Query 107671 AAGTGCAGATCTTTGCGTCCGAGACTATTGGTTG-TGAGGGTCGTGCCCAGTATTATGAG 107729 | || ||||| | | | |||| || ||| || || || |||| ||||| || Sbjct 241695 ACGTTCAGATATCGGTGACCGA-ACAGCTGGGTGTTGGGGACCGTGGTGGCTATTACGAA 241637 Query 107730 ACCGCTGGTGCTGTCAGGGATATGCTGCAGAATCACATTCTGCAAGTGTTGGCATTGATA 107789 | ||| |||||| | ||||| ||| | ||||| |||||| ||||| || | |||| Sbjct 241636 AGCGCCGGTGCTTTAAGGGACATGATCCAGAACCACATTTTGCAATTGCTATGTCTGATT 241577 Query 107790 GCAATGGAAGCACCT 107804 | ||||||| | ||| Sbjct 241576 GGAATGGAAACCCCT 241562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567132698948000