Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq98 176 5e-39 seq689 158 1e-33 seq531 122 1e-22 >seq98 Length=772300 Score = 176 bits (194), Expect = 5e-39 Identities = 396/590 (67%), Gaps = 10/590 (2%) Strand=Plus/Plus Query 93091 GCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAA 93150 ||| ||||| || ||| | || || |||| || ||||||||||| || || |||| Sbjct 410392 GCAGGCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAG 410451 Query 93151 ACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaa 93210 ||||| | ||| |||| ||| || | ||| || || ||| || || || || || Sbjct 410452 CCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAACAGAAGCTCCCGCTGAAGAA 410511 Query 93211 TATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCT 93270 || |||||||| || || || ||||| | |||||||||||||||| || | | Sbjct 410512 AATGCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA----- 410566 Query 93271 GATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTT 93330 ||||| || ||||| || ||||||||||| | |||||| | || || | || | Sbjct 410567 -ATCCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATG 410625 Query 93331 AAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACAT 93390 || || ||| || || | |||| || || |||||||| | ||| | ||| | Sbjct 410626 GAACAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGT 410685 Query 93391 TTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGAT 93450 |||||| |||| || ||||| || ||||| || || ||||| | ||||| | | Sbjct 410686 TTCAGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAG 410745 Query 93451 CTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTG 93509 ||| ||||| | | || | || || | || |||||||| || || || || ||| | Sbjct 410746 CTGTACTTCGCTCATGAAGT-TCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAG 410804 Query 93510 CaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC-ATCTTTAAGCTTATCCCAA 93568 |||||||||| | |||||| || ||||| ||| | | |||||| || ||||| Sbjct 410805 CAAAAAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAG-TTGTCCCAG 410863 Query 93569 TCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTT 93628 | | || | ||||| || | |||||| | ||||| || |||||| || Sbjct 410864 TGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGCTTCACTCTTC 410923 Query 93629 TTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 || ||||| ||||| || || | |||| ||| || || | ||||| || Sbjct 410924 TTATACATTTCCCAGATTTCAGGGTATTTAATAGGCAAAAGAACAAAGCG 410973 >seq689 Length=46727 Score = 158 bits (174), Expect = 1e-33 Identities = 184/244 (75%), Gaps = 7/244 (3%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || ||||||||| || ||||||||||| || |||||||| ||| || || ||| Sbjct 18315 CAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAA 18256 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 ||||| | || ||| || |||||||||||||| |||||| ||||||||||| ||||| Sbjct 18255 CCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAG 18196 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA--ATTTGCGGAATTACTGC 93269 ||||| || ||||||||||| ||||| | ||| |||||||| | || |||||| || Sbjct 18195 ATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTT--GGAATT--TG- 18141 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 ||||||| | || ||||| || || || ||||| | ||| || | || || || || | Sbjct 18140 AGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCAT 18081 Query 93330 TAAA 93333 | || Sbjct 18080 TGAA 18077 >seq531 Length=89189 Score = 122 bits (134), Expect = 1e-22 Identities = 176/246 (72%), Gaps = 7/246 (3%) Strand=Plus/Plus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCG--TGATATCAACTCATTGCTGAATGTTA 93149 || |||||||| |||||||||||| || || |||||| |||| || | | | Sbjct 87869 CAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATAT--ACTCGTTCGAGTGGGCCA 87926 Query 93150 AACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaa 93209 ||| || | || || |||||||||||||| ||||| ||| ||||| ||||| |||| Sbjct 87927 GACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAA 87986 Query 93210 aTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGC 93269 | |||||||| || |||||||||||||| | | || ||||| ||| || | || Sbjct 87987 AGATACCTTCGACTGCTGCAAATGCCACCAGTCTCTCTGCAAACGATGCAGAGT---TGT 88043 Query 93270 TGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGT 93329 | ||||| | ||||||||| || || || || | ||| || | ||| || ||||| | Sbjct 88044 TTATCCAACGAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCAT 88103 Query 93330 TAAATA 93335 | |||| Sbjct 88104 TGAATA 88109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556763314556200