Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq92 114 3e-20 seq1565 104 5e-17 seq689 96.9 7e-15 seq2025 91.5 3e-13 seq1594 87.8 4e-12 seq1171 87.8 4e-12 seq988 87.8 4e-12 seq956 87.8 4e-12 seq579 87.8 4e-12 seq391 87.8 4e-12 seq227 87.8 4e-12 seq220 87.8 4e-12 seq35 87.8 4e-12 seq1172 86.0 1e-11 seq531 84.2 4e-11 >seq92 Length=42423 Score = 114 bits (126), Expect = 3e-20 Identities = 235/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| ||| |||||||| | || | ||||||| || || | ||| | ||||| Sbjct 5408 GACTTTATCAACAAGGAGTTGATCCATTTCTCGTGGGCTGCCAATCACCGTGCCATTCCA 5349 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 | | ||||||| | ||||| || || |||||| | |||||| |||||||| Sbjct 5348 TCGGCGATGGATGGATTGAAGCCGGGTCAACGAAAGATCTTGTTTGCCTGTTTCAAGCGT 5289 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 ||| |||| ||||| ||||| ||||| | ||| || || | || | | | Sbjct 5288 AACTTGGTCAGTGAAATCAAGGTGGCTCAACTCGTTGGATACGTTGCAGAGCATACAGCA 5229 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 |||||||||||||||||| ||| | | || || ||||| || |||||||| Sbjct 5228 TACCATCACGGTGAGCAGTCACTGTCGTCAACAATCGTCAAGATGGCTCAAGACTATGTT 5169 Query 218758 GGCAGTAACAACATGA-ACTTGCTGCTCCCCAAC-GGTCAGTTTGGTTCTCGTCTATTGG 218815 ||||| |||||| | |||| || ||||| | |||||||||||| |||||||| | Sbjct 5168 GGCAGCAACAACGTTCCACTT-CT-CTCCCAAGGTGGTCAGTTTGGTACTCGTCTAGAAG 5111 Query 218816 GTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTG 218859 |||| | ||| || ||| | ||||||||||| |||||| Sbjct 5110 GTGGTGACGATGCCTCTAGTGCTCGTTATATCTTTACCAAGTTG 5067 >seq1565 Length=26367 Score = 104 bits (114), Expect = 5e-17 Identities = 226/336 (67%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCC 218577 ||||| | ||||||||| | ||||| |||||| ||| || ||||| |||||| Sbjct 8445 GACTTTGTAGACAAGGAGTTGATTCTGTTCTCGATTGCCGATTGTGAACGTTCGATTCCC 8504 Query 218578 AGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGG 218637 |||| ||||| |||||| |||||||| | ||||| | | | | |||||| | Sbjct 8505 TCGTTGGTCGATGGACTCAAGACATCGCAGAGAAAGATTTTGTATTCTTGCTTCAAGAGA 8564 Query 218638 AACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGC 218697 ||||| | || |||| || |||||||| ||| || || || || || | Sbjct 8565 AACCTAAAGAAGGAGATTAGAGTGGCTCAGTTGATTGGATACGTGTCGGAGCAGTCGGCA 8624 Query 218698 TACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTG 218757 ||||| || || ||| |||| || | ||||| | || |||||||| |||||||| Sbjct 8625 TACCACCATGGAGAGATGAGTTTGTCGCAGGCCATCATTGGTATGGCACAAGACTATGTT 8684 Query 218758 GGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCTATTGGGT 218817 ||| |||||||| || ||||| ||| | || |||||| | | | ||| Sbjct 8685 GGCTCAAACAACATCAATTTGCTCTACCCGAGTGGATCGTTTGGAAGCAGATTGGTTGGT 8744 Query 218818 GGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACA 218853 ||||||||||| | || |||| || ||| || ||| Sbjct 8745 GGAAAGGATAGCTC-TCAGCCACGT-TATATTCACA 8778 >seq689 Length=46727 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 |||||||| | ||||| | ||| || || | |||| | ||||| ||| ||||| Sbjct 18345 AGCTTGTTGACGAGCTTGGTGTAGAGCAGACAGGCAAAGTCGCAGTGCAAACCTTCGTCA 18286 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||||| | || || ||||||| ||||| ||| ||||||| Sbjct 18285 CGGCTGATCAACTCGTTGGAAAAGGTCAAACCTGGCATCAATCCACGCTTCTTGAGCCAA 18226 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||||| || || |||||||| | | ||||||||| | | || || | Sbjct 18225 AAGATTGAACAGAAACTACCAGAGAAAAAGATACCCTCGACGGCTGCAAACGCCACCAAA 18166 Query 251980 CGCTCAGCAAACGACTTG 251997 ||||| |||||||||||| Sbjct 18165 CGCTCGGCAAACGACTTG 18148 >seq2025 Length=6189 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| || || |||| || ||||||| ||||||||| Sbjct 6160 AGCCCAGTTAGCTCAGTCGGTAGAGCGCGAGGCTTTTAACCTCGTGGTCGGGGGTTCGAG 6101 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 6100 CCCCCCATTGGGC 6088 >seq1594 Length=933 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 115 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 174 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 175 CCCCCCATGGGGC 187 >seq1171 Length=347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 194 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 253 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 254 CCCCCCATGGGGC 266 >seq988 Length=41819 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 25144 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 25085 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 25084 CCCCCCATGGGGC 25072 >seq956 Length=36139 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 271 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 330 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 331 CCCCCCATGGGGC 343 >seq579 Length=77869 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 294 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 235 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 234 CCCCCCATGGGGC 222 >seq391 Length=380 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 180 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 121 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 120 CCCCCCATGGGGC 108 >seq227 Length=29673 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 3506 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 3447 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 3446 CCCCCCATGGGGC 3434 >seq220 Length=133698 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 133428 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 133487 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 133488 CCCCCCATGGGGC 133500 >seq35 Length=86120 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| |||||||||||||||||||||| | ||||||| | ||||||| ||||||||| Sbjct 456 AGCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAG 397 Query 142563 CCCCACATCGGGC 142575 |||| ||| |||| Sbjct 396 CCCCCCATGGGGC 384 >seq1172 Length=9910 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| |||||||||||||||||||||| | ||||||| | ||||||| |||||||||| Sbjct 324 GCCCTGTTAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGGGGGTTCGAGC 265 Query 142564 CCCACATCGGGC 142575 ||| ||| |||| Sbjct 264 CCCCCATGGGGC 253 >seq531 Length=89189 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 251850 ACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTT 251909 ||| || ||||||||||| ||||||| || | |||| |||||||||| ||||| || Sbjct 87889 ACCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAGACCAGGCATCAAGCCACGTTT 87948 Query 251910 CCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCA 251969 | |||||||||| || | || || ||||||||| | | ||| ||||| | | Sbjct 87949 CTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAAAGATACCTTCGACTGCTGCAAA 88008 Query 251970 TGCAACAAGGCGCTCAGCAAACGA 251993 ||| || || | ||| |||||||| Sbjct 88009 TGCCACCAGTCTCTCTGCAAACGA 88032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027652365928205