Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_008717.1 Length=36415 Score E Sequences producing significant alignments: (Bits) Value seq523 253 5e-63 seq9928 116 9e-22 seq215 84.2 5e-12 >seq523 Length=83696 Score = 253 bits (280), Expect = 5e-63 Identities = 558/819 (68%), Gaps = 33/819 (4%) Strand=Plus/Plus Query 988 GCTATGTTTATGCCCTAAGTCACGTTAGACACCCCTaaaaaaaaCCACCCTGCCAGGTGG 1047 ||||||||||||||||| || |||||||||| ||| ||||||||||||| | ||||| Sbjct 49468 GCTATGTTTATGCCCTAGGTAACGTTAGACATCCC---AAAAAACCACCCTTGCCGGTGG 49524 Query 1048 TGAG--ATGGAACGTAGGCATGAACAGAACCCGAAATCCCCCGCGACAACAACGTCCCGC 1105 | | ||||| |||||||||||| |||| |||||||| | ||| |||| || Sbjct 49525 TTATGAATGGACGCTAGGCATGAACAAAACC-GAAATCCCGCTTGACC-CAACCCTGCGA 49582 Query 1106 TGGGAGTGGATCAAATACCCAGCTCCGCGCCAGGGGGTCGTCCCTGGCCGAGGTGGCCCG 1165 ||||| ||||||||||||| | || || || | || |||| || || |||| || Sbjct 49583 TGGGAATGGATCAAATACCAA-CTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCG 49641 Query 1166 CTCCCTCGACGTATCCAGCC-CGGCAGTCAAAAACGCCAAGCTGAATCCCTACCCCTCGG 1224 || ||||| | ||| | || ||||| ||||| |||| | | || || || Sbjct 49642 TGAACTTGACGT-TACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCG-CGA 49699 Query 1225 GTAGAGCGCGCCATCGCTGCTGTACTCGACCTCAGCCCCCTAGTGCTGTGGCCTGAGCGC 1284 | ||||| || || || || || | ||||| || | | ||||||| || || Sbjct 49700 ATGGAGCGAGCTATTGCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGT 49759 Query 1285 TGGCTCGACGACGAGAATCCGAAGCGGCAACGGCCCAATCGCTCGGAGACCTTGCAGG-C 1343 ||| || ||| | | || | || || | ||| | || | |||| | Sbjct 49760 TGGAACGCAAACG-GCACCCCA-----CACCGT---ATTCGGGTGCAGCGC--GCAGAAC 49808 Query 1344 ATATGTCAGACATAT-GCCAAGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGC 1402 | | || || | | |||||| || | | |||| | || || || | Sbjct 49809 ACAACGCA-ACTTCTAGCCAAGAGC------ATAACCCAGCTTA--TGCCCTTCGACACC 49859 Query 1403 GTAAAGCCGACGCGGGGGCTTGAACATGGCCCGCCGCAAAGACGACCGCACCCTGGACAT 1462 ||||| ||| | ||| || | |||||| ||| || || || || || | ||||| Sbjct 49860 GTAAAACCGGCACGGAGGTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACAT 49919 Query 1463 CTTCGATGTTCCGCAGCCAGCCCGCGCTATACCCGGCGAGTGCAACTATGCCGCCCAGGT 1522 |||| ||| || ||||||| | ||||| || || | ||||| ||||||| ||||| Sbjct 49920 CTTCTCTGTCCCACAGCCAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGT 49979 Query 1523 CAGCGAGCTGGTCAGCGAAATTCTGAAGGCCGCCAACCTCGACCGTTACGAGGTCGCCGC 1582 ||| || ||| ||||||| |||||||| | || | || ||||||||||| | | || Sbjct 49980 CAGTGAACTGATCAGCGAGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGC 50039 Query 1583 CCGCATGTCGCGCCTATCTGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAG 1642 |||||||| ||| | ||||||||||||||||| ||| ||||||| ||||| |||||||| Sbjct 50040 ACGCATGTCTCGCTTGTCTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAG 50099 Query 1643 TCCCGCCCGAGCTGATCACAACTTGCCTTTCTACCGCGCCGCCCTCCTGGAGGACGTCTG 1702 || |||||| | || || ||| |||| ||||| | ||| | || || || || || || Sbjct 50100 CCCAGCCCGAACAGACCATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTG 50159 Query 1703 CGCGAGCCACCTGCTGACCAACTGGCTGGTCGATGTGCGGGGCGGCCGCGTGGCCTATGG 1762 || ||| | | ||| |||||||||| || || || ||||||||||| || || Sbjct 50160 TAGCAGTCACGTTTTAACCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGG 50219 Query 1763 CCGAGACGCACTGCTCGCCGAGCTGGGCCGCCTGGAGCG 1801 || || ||||| ||| ||||| || || |||| ||| Sbjct 50220 TCGCGATGCACTCAACGCGGAGCTTGGTCGTCTGGCGCG 50258 Score = 129 bits (142), Expect = 1e-25 Identities = 136/175 (78%), Gaps = 7/175 (4%) Strand=Plus/Plus Query 8925 ACGGCCAAGAACCGCA--CCGTCCACTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTC 8982 ||||||| |||| | || | || | ||||||| ||||||||| | | ||| ||||| Sbjct 56866 ACGGCCAGGAACAACTTGCCCTGCATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTC 56924 Query 8983 TGCCGGACGTGGTGGTCCGGTACTGATGAGCAGCCACCCATGACGAACGAA--ACCAAGA 9040 ||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| | | Sbjct 56925 TGCCGGACGTGGTTGTCCGGTACTGATGAGCAGCCACCCATGACAGACGAAACACCCAAA 56984 Query 9041 CAGACCGCCAGCGCCGCCTGGCGCGGGAACGCCAACGAGCGAAGCGCGAGCGCGA 9095 ||| ||| | ||||||||| | || || |||| || ||||| ||||||| Sbjct 56985 CAG--CGCAAAACCCGCCTGGCATGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57037 Score = 118 bits (130), Expect = 2e-22 Identities = 219/321 (68%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9342 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9401 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57266 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57325 Query 9402 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATTGACCAGGTA 9461 | ||||| ||||| ||||| |||||||| ||| | ||| |||||||| | | ||| Sbjct 57326 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57385 Query 9462 CTGGTCGAACTCCAGCGTCTGGGCTGG------AAACCGAAGAGCAACCGGCAAGGCCGG 9515 |||| ||| | || |||||||| ||||||| | || ||||||||| Sbjct 57386 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57442 Query 9516 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGCAAAATCACCGCGCTCCTG 9575 | || | | | ||| | ||||| || || || | ||||| || | || Sbjct 57443 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57502 Query 9576 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCATATGGCCCGGCGCATGTTCCAGGTC 9635 ||| ||| | ||| ||||| || |||||| |||||||| |||||||||| ||||| Sbjct 57503 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57562 Query 9636 GAGCGGGTCGAGTGGCTGGAC 9656 ||||| || || ||||| ||| Sbjct 57563 GAGCGAGTGGAATGGCTAGAC 57583 Score = 89.7 bits (98), Expect = 1e-13 Identities = 277/418 (66%), Gaps = 8/418 (2%) Strand=Plus/Plus Query 177 ATCCATCGCCCAAGCCAGACAACGCGCCCAATGATATCCAAGTCAGAAAGCTGGTCCTTG 236 ||||| | ||| ||| || ||||| ||||| || |||| ||| | || ||| || Sbjct 48650 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48709 Query 237 GGGACGACCATGTCCTTATACGCCTTGTTTTCGCTGATGATCGCGATAGAGCCATCGAAC 296 ||||| ||||| || || |||||||| || |||||||| ||||| || |||||| Sbjct 48710 GGGACAACCATATCGCGGTAGGCCTTGTTCTCACTGATGATGTGAATAGACCCGTCGAAC 48769 Query 297 TGCCGTTGTAAGCGCTTGGCGTAGAGCTGATCCCCGACCCGAATCACATAGATCGCTTCA 356 ||||| || | | || || ||||| || || | | ||| || || || | || || Sbjct 48770 TGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGCCTC- 48828 Query 357 TCCCGCACG-GTTCTAAGGTCATGGTCGATAACAACGGCGTCGCCATCCGACAGGAGGGG 415 |||| || | | || || ||||| || | || | |||||||| || || Sbjct 48829 TCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAGTCC 48888 Query 416 TTCCATGGAGTCGCCCCCGACCCTTACTGCCGACATCCTGGTTGGCTCTAACCCCTTCTT 475 ||||| || || || | || | | ||| |||| | | | || | || | ||| Sbjct 48889 CTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTGCTT 48948 Query 476 GCTCAAGC-TGTA-GCGCGTAAAGGCAAGCTGCGTAAGAACGTGTGCGCCTTCGCTCCAG 533 || |||| ||| ||| || || |||||||| || || || || |||||||||||| Sbjct 48949 GC-GAAGCGAGTACGCG-GTGAACGCAAGCTGGGTTAGGACAGTAGCCCCTTCGCTCCAG 49006 Query 534 CTTCCATGTCCCGCGCTGACCCT-CGCGTCATACAGGGGGACGTAGACATATTGGTCC 590 || |||||||| || || | ||||| |||| || ||||| | || | |||| Sbjct 49007 GCGCCGTGTCCCGCACT-ACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTCC 49063 Score = 87.8 bits (96), Expect = 4e-13 Identities = 349/537 (65%), Gaps = 18/537 (3%) Strand=Plus/Plus Query 4255 GTTGCCCGGCCTGGTCTGCTTCTACGGCCCGTCCGGCTTCGGCAAATCCGTTTCGGCCGC 4314 |||||| |||||||| | |||||| | |||| | |||||| |||| || || Sbjct 52459 GTTGCCTGGCCTGGTAGTGATGTACGGCGCAAGCGGCCTTGGCAAAAGCGTTGGCGCTGC 52518 Query 4315 CTGGGTCGCCAATCGCCGCCGCGCCTACTACGTCCAG-GCCAAAAGCGTCTGGACCCGCA 4373 || | ||| || | | ||| ||||| ||||| || ||| | | ||||| | Sbjct 52519 CTTCGCCGCAAACCAGCACCGTGCCTATTACGTGGAGTGCCGCGA-CACCTGGAGTAAAA 52577 Query 4374 AGCACACGCTGAAGTCGATCCTGGGTGAAATGGGCATCAAGCCGGCTGGCACGATCCCGG 4433 || ||| | | ||||| | || ||| ||||| | ||||| || || ||| Sbjct 52578 AGGCTTTCCTGCACGCCATCCTTCGCGAGATGAGCATCCAACCGGCCCCGACCATGTCGG 52637 Query 4434 AAATGGCCGACCAGATCGCCGAGGAACTGGCCGCCAGCGGCCGCCCGCTGATCATCGACG 4493 |||| |||||||||||| ||| | || || ||||| ||||||||| | ||||||| Sbjct 52638 TGATGGTCGACCAGATCGCTGAGCAGTTGTCCAAGAGCGGGCGCCCGCTGTTGATCGACG 52697 Query 4494 AAATGGACCACCTGGTC------GCCGCTGGCCAGGTCGAGCTGATTCGTGATCTGTACG 4547 | || | ||||| || |||| | |||| || |||| || ||| ||| Sbjct 52698 ACGTGCAATACCTGCTCGAAAAAGCCG-TAGCCA--ACGTCCTGA-CCGACATC--TACA 52751 Query 4548 AGTCCAGCCAAGCCTCCATCTTGCTGATCGGCGAGGAAATGCTGCCGACCAAGCTGAAGA 4607 | ||||| ||| |||| | ||||||||||| ||| |||| | ||| || Sbjct 52752 ACGCCAGCGAAGGGACCATTGTCCTGATCGGCGAAGAACGTGTGCCCGGTAGCCTGGCGA 52811 Query 4608 AGTTCGAACGCTTCCATGGCCGCGTGCTGAGCTGGGTTCCGGCCCAGCCAGTCTCCCTGG 4667 || | |||||| | ||| ||| |||||| ||||| || || |||| | | |||||| Sbjct 52812 AGCTGGAACGCCTGCATAACCGGGTGCTGGAGTGGGTACCTGCGCAGCGCGCCACCCTGG 52871 Query 4668 AGGACGCCCGCAACCTGGCGCCGGTCTACAGCCCCGGAGTGGC-TATCGCTGACGACCTG 4726 | || ||| |||||| | ||| | |||||| | || ||||||| || || Sbjct 52872 ACGATCTGCGCGCCCTGGC-CGAGTCAAGCTACCCGGAATTGCACTTCGCTGATGATTTG 52930 Query 4727 CTCGCGCACTTGGTGAAGAA-GTCACTGGGCTCTGTCCGTCGCGTCGCGGTGAACCT 4782 || | || || ||||| || | | |||| | ||||| || ||||| ||||| Sbjct 52931 CTGGATGACCTGCGCAAGAAGGTGAAT-GGCTGCCTGCGTCGTGTAGCGGTCAACCT 52986 Score = 87.8 bits (96), Expect = 4e-13 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 6397 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAACTGCTGGCCGCCGAGGTGGCCCGCAGC 6456 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 6457 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACCGTCAGCACCATCCTC 6516 | | |||| || ||| || || |||||||||||||| || |||||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 6517 GCCAACCGCTACCCGTCGCCCTCGACGATCCGCGTCGAGCGCCGCGTCCTGGCCGCGCTG 6576 |||||||||| |||||||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 6577 AGCCGTATTGAGTGCCCGGCCTTGGGCGAGGCGGTGACCTCGGTCGAGTGC 6627 | || ||||| || ||| ||| |||| | || ||| ||| | ||||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTGC 53961 >seq9928 Length=455 Score = 116 bits (128), Expect = 9e-22 Identities = 252/372 (68%), Gaps = 4/372 (1%) Strand=Plus/Plus Query 13352 CGCCGCCAGATCGAGGCCGAGGTCGCAGGCTTCGACCCCGACC-CGAAGGCCAGCGCCGT 13410 ||||||| | |||||||||| || ||||||| |||||| || || | | | | Sbjct 86 CGCCGCCTGGTCGAGGCCGAATGCGATGGCTTCGCGACCGACCACGCAGCGC-GTGACCA 144 Query 13411 CCGGCGTGAACGGGC-CAGCGCGGACTATGAGTATTTCGCCCGGACCTACTTCCCGCACT 13469 || ||| ||||| ||| || |||| |||| ||| || ||||| ||||| |||| Sbjct 145 GCGCCGTACCCGGGCGCAGACCG-ACTACGAGTTCTTCTGTCGCACCTATTTCCCTCACT 203 Query 13470 ACGTGAAGCGCGGTAACGCGCTGCTCCACGACTACCTCTACAAGCGGTTGCCCGAGCTGG 13529 |||||||| ||| ||||| |||| || ||||| | |||||| |||| Sbjct 204 ACGTGAAGAGCGAGGCATCGCTGTTCCATCGCTGGTTCTACGACACCGTGCCCGGCCTGG 263 Query 13530 TGGACCACCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCA 13589 | || || || || |||| | | || |||| || |||||| | || ||||||| Sbjct 264 TCGATCAACCCACGGGGCAGCTCATCGAGATCTCGGCCCCACGTGGTGAGGCGAAGTCCA 323 Query 13590 CCCTGGTGAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCC 13649 |||| | | ||| | ||| | | ||||| || | |||| ||||||| | | | Sbjct 324 CCCTCGGTACGCAGCTCTTCACGCTTTGGTGTGTGGTGACCGAGCGCAAGCGATTCATTC 383 Query 13650 TGATCATCATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAGGCGATCAAGGCGGAGC 13709 | | | ||||| |||||| |||||||| || ||||||||||| |||||| |||| Sbjct 384 CGCTGGTGATGGACAGCTTCGACCAGGCCGCGACCATGCTGGAGGCCGTCAAGGTCGAGC 443 Query 13710 TGGAGTTCAACC 13721 ||||| ||||| Sbjct 444 TGGAGAGCAACC 455 >seq215 Length=48791 Score = 84.2 bits (92), Expect = 5e-12 Identities = 166/241 (69%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11033 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACG--CAACAA 11090 |||| ||||| | |||||| ||| ||||||||||||| | || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11091 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTCGATAC 11150 ||||| ||||| || | ||||| | ||| || || ||||| || ||||| Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11151 CGCACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11207 | | ||||| ||||| ||| ||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11208 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACAC 11267 ||| | ||||| | || | ||| ||||||||||||||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11268 C 11268 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116387040524370