Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq404 297 4e-75 seq689 176 9e-39 seq98 105 1e-17 seq531 93.3 8e-14 >seq404 Length=78127 Score = 297 bits (328), Expect = 4e-75 Identities = 758/1147 (66%), Gaps = 19/1147 (2%) Strand=Plus/Plus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 || ||||||||||| || || || | ||||| ||||| || | || ||| |||||||| Sbjct 48761 ATAAAGACGTCGGCGAGACCTTGGATACCGATACCGATTGGACGATGACGCATGTTGGAG 48820 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 ||| || | || ||||| |||||| ||| || | |||||||||||| ||| Sbjct 48821 GTACGGGCCTCTTGAACAGGGTAGTAGTTGCGGTCAATGATGCGGTTGAGGTTGCGAGTG 48880 Query 244595 ATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATG 244654 || || | | | || || | || || | | | |||| | | | || Sbjct 48881 ATGATACAGGTCATTTCAAAGAGATGTTGGTGGTTAAAGTGGGCGGGAACGCCATCCTTG 48940 Query 244655 GTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCC 244714 | | ||||||| | ||||| | ||| |||||||| |||||||| || || Sbjct 48941 GCTGGCACAACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCG 49000 Query 244715 GAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGC 244774 | |||||| ||||||||||| ||||||||||| ||||| ||||||||| || | | Sbjct 49001 GGAGAGGTGTATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTC 49060 Query 244775 TGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 || || || |||||||| |||||||||||||||||||| || | || || ||||| Sbjct 49061 TGTTGGTTTGACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCA 49120 Query 244835 AGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG 244894 | ||| | ||| | | | |||||| || ||||||| ||| ||||| || | Sbjct 49121 ATCTGCGACTCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGA-CCGAG 49179 Query 244895 CCCT----CTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTC 244950 ||| ||||||||||||||||| || || ||||||| |||||| || | Sbjct 49180 ACCTGGGGTGGCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAGC 49239 Query 244951 TAGGCCGGGGCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCT 245009 || || ||| | || ||| || | ||| |||||||| || | ||| ||| | || Sbjct 49240 GAGACCTGGG-GCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCT 49298 Query 245010 GCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCG 245069 ||| ||||| |||| | ||||||||| | |||||||| | || | | ||| ||| Sbjct 49299 CCATAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCT 49358 Query 245070 AGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGT 245129 || |||||| | || || | || || | ||| ||| ||||||| ||||| | || Sbjct 49359 TTCCGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGT 49418 Query 245130 AGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGC---- 245185 ||| || | ||| || |||||| ||||| ||||| | | | ||||| Sbjct 49419 AGATGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGA----CGTAGCGAGCAGTG 49474 Query 245186 GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATG 245245 ||||||| | ||| || | || || | ||||| || ||||||||||| ||| Sbjct 49475 TCGTTGAACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATA 49534 Query 245246 TAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAG 245305 || | | | | || ||| || | | || | || ||||| ||||||| Sbjct 49535 TATGAACGGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAG 49594 Query 245306 ATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTG 245365 ||||||||||| ||||| ||| || || || || || ||| |||||| | | Sbjct 49595 ATGAGGGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGG 49654 Query 245366 AGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTG 245425 | || ||||| || |||| || ||| | | ||| |||||| || || || ||| || Sbjct 49655 ACAAGGAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTG 49714 Query 245426 GCGTGGGTAAAGTAGCGGCTCGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTG 245485 ||||||||||||||||| || || | | || |||| || |||||| |||| | Sbjct 49715 GCGTGGGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCG 49774 Query 245486 TCGCCGTGGATCTGCAGGGCGCACCTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCC 245545 |||||||||| || | | | |||||| |||||||||| ||| ||| | Sbjct 49775 GCGCCGTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACG 49834 Query 245546 TCG--GGTCCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGC 245603 ||| | | | | ||| |||||| ||||| | |||||||| ||||| | ||| Sbjct 49835 TCGTCGATGC--GGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAAAAAGTCGTACT 49892 Query 245604 CAAAGTC 245610 ||||||| Sbjct 49893 CAAAGTC 49899 >seq689 Length=46727 Score = 176 bits (194), Expect = 9e-39 Identities = 358/522 (69%), Gaps = 16/522 (3%) Strand=Plus/Plus Query 42610 TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACT 42669 ||||||| ||||| ||||| || || || ||||||||||||| |||||||| | | | Sbjct 18075 TGTTCAATGCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGAT 18134 Query 42670 GGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGG 42729 ||||| | | || | | ||| | |||| | |||| || ||| | |||||||||| Sbjct 18135 GGATCTCAAATTCCAAGTC---GTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGG 18191 Query 42730 GCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGC 42789 | ||||| ||||| || ||| || ||||| ||||||||| || | | ||||| Sbjct 18192 GTATCTTTTTCTCTGGTAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGC 18251 Query 42790 CCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTG 42849 | || | ||||| || ||||| | |||||| | ||||| || |||| | ||||||| Sbjct 18252 CAGGTTTGACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTG 18311 Query 42850 CCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG--GAGCGGGTCCGGGC 42907 |||| || || | | | | | | ||| ||||| ||||| | || || | | Sbjct 18312 CCTGTCTGCTCTACACCAAGCTCGTCA---ACAAG--CTCGACGCCAAGACCATCGAGTC 18366 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 |||||| || ||||| || ||||||||||| |||| |||| || ||||| Sbjct 18367 GATCATCCGCGACGCCGTCGACTGTGAGAAGGAGTTTGTCACCGAGTCACTTCCCGTCGA 18426 Query 42968 CCTGGTCGGCATGAAC-CACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATC 43026 || | ||||||||| || | ||||| | | ||||| ||| |||||||| || Sbjct 18427 TCTCATTGGCATGAACAGTCGTGC-CATGTCCCAATACATTGAGTTTTGCGCCGACCGTC 18485 Query 43027 TCCT-GT-GCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTAT 43084 | || || ||| | || || |||||||| | | ||| ||||||| || Sbjct 18486 TACTCGTCGCC--CTCGGCTACAAAAAGATCTACAACTCTGCCAACCCATTCGACTGGAT 18543 Query 43085 GGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAA 43126 ||||| ||||||||| || ||||||||||||||||||| || Sbjct 18544 GGAGATGATCTCGTTGCAGCGCAAGACCAACTTTTTCGAAAA 18585 >seq98 Length=772300 Score = 105 bits (116), Expect = 1e-17 Identities = 294/444 (66%), Gaps = 14/444 (3%) Strand=Plus/Minus Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 ||||| || || || || || ||||||||| || ||||| ||||| || | ||| Sbjct 410820 ATACTTGCTTTTTTTGCTGCAAGTGACGGCATTGTAAATGAAAACCTTGCAGTGAACTTC 410761 Query 42480 ATGAAAGAGGTGCAGTACTTT--GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAG 42537 |||| || || ||| ||| || || || || || || ||||||||||| || | Sbjct 410760 ATGAGCGAAGTACAG--CTTCCCGAAGCCCGTTGTTTTTATGGCTTCCAGATCATGATGG 410703 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 | ||| | |||||||| || || ||| || | || || || ||||| | | Sbjct 410702 AAAACATCCACTCTGAAACCTATGCGCTGCTGATCGATACCTATATTAAAGATCCTGAAG 410643 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 | || |||||||| | ||| | |||||| | || || | ||||| || || || | Sbjct 410642 AAAAAGACAGGCTGTTCCATGCCGTAGAGACGGTTCCTTGTGTAAAGAAAAAAGCAGAAT 410583 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | |||||| ||| | || || || | ||| | |||| || || Sbjct 410582 GGGCATTGCGCTGGATTGAGGG------CGGAAATTTTGCCGAACGTTTGGTGGCTTTCG 410529 Query 42718 CCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 |||| || || ||||| |||||| |||| || ||| || ||||||||| | || | Sbjct 410528 CCGCAGTGGAAGGCATTTTCTTCAGCGGGAGC-TTCTGTTCGATCTTCTGGTTGAAAAAA 410470 Query 42777 A-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | ||| | |||||| || || ||||| || || | || ||| || |||||| | Sbjct 410469 AGAGGCCT-GATGCCAGGGCTAACCTTTAGTAATGAGTTGATTTCCAGAGATGAGGGGAT 410411 Query 42836 GCATAGGGACTTTGCCTGCCTCCT 42859 |||| | || ||||||||||| || Sbjct 410410 GCATTGTGAATTTGCCTGCCTGCT 410387 >seq531 Length=89189 Score = 93.3 bits (102), Expect = 8e-14 Identities = 172/250 (69%), Gaps = 7/250 (3%) Strand=Plus/Minus Query 42612 TTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGG 42671 ||||| || || ||||| || || || |||| |||||||| || ||||| || ||| Sbjct 88107 TTCAATGCTATAGAGACAATTCCATGTGTCAAAAAGAAGGCTGATTGGGCTCTTCGTTGG 88048 Query 42672 ATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGC 42731 || | | | | || |||| | ||||| ||||| || ||| | || ||||| || Sbjct 88047 ATAAACAACTCTG---CATCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGAAGGT 87991 Query 42732 ATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGC 42789 ||||| ||||| || ||| || || |||||||||||| | | ||| | ||||| Sbjct 87990 ATCTTTTTCTCTGGAAGTTTCTGTTCGATATTCTGGCTCAAGAA--ACGTGGCTTGATGC 87933 Query 42790 CCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTG 42849 | || || || ||||||||| ||||| | || || || | ||| | ||||||| Sbjct 87932 CTGGTCTGGCCCACTCGAACGAGTATATCAGTCGCGATGAAGGTTTACATTGTGACTTTG 87873 Query 42850 CCTGCCTCCT 42859 |||| || || Sbjct 87872 CCTGTCTACT 87863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944173881618800