Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009235.2 Length=48674 Score E Sequences producing significant alignments: (Bits) Value seq215 84.2 7e-12 seq179 80.6 8e-11 >seq215 Length=48791 Score = 84.2 bits (92), Expect = 7e-12 Identities = 159/225 (71%), Gaps = 12/225 (5%) Strand=Plus/Plus Query 19348 TGTACGGGATCGATCTGAAATGGGCGTTTCCGGGTGACGGATCCGCTGGCGACACGCAGC 19407 ||| ||| |||| | |||| |||| |||||| || || ||| | || || |||| Sbjct 33217 TGTTCGGCATCGGTTTGAAGTGGG-GTTTCCC--TGCTGG---CGCCGAAGATACCCAGC 33270 Query 19408 GAACGGAGATCTGGTACAGCCGCACGCCGAATCGCGACGACGCGACCAAGTTCTCCGACT 19467 | |||||| ||||||||| || ||| || | || || |||||| ||| | | || | Sbjct 33271 GGACGGAGCTCTGGTACAACCCGACGAACAACCTCGGCGCCGCGACGAAGCTGGCGGATT 33330 Query 19468 TCGCGTATCCGCAGGC-GTCGACGTCGTAT-CAGGGGCTCGCGGTCGGGCAGGT-GTTTT 19524 | || || |||||||| | | || || || ||| ||| || | ||||| | ||| | Sbjct 33331 TGGCATACCCGCAGGCTGACTAC--CGCATGCAGTCGCT-GCTGGCGGGCGCGCAGTTCT 33387 Query 19525 ATTTCTGGGCGCGCCTGGTCGACACGTCCGGCAACGTCGGGCCGT 19569 ||||||||||||||||| ||| |||||||| |||| |||| Sbjct 33388 TCTTCTGGGCGCGCCTGGTGGACCGCACCGGCAACATCGGTCCGT 33432 >seq179 Length=18974 Score = 80.6 bits (88), Expect = 8e-11 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 17910 GTCCCGACAAACTACGACCCGGAGACGCGTACGTACTCGGGTACATGGGACGGTACGTTC 17969 || ||| | ||||| ||||| ||||||| ||| |||| |||||||| ||||| Sbjct 15587 GTGCCGTCGAACTATAACCCGCAGACGCGGCAATACAGCGGTATCTGGGACGGAACGTTT 15646 Query 17970 AAGGCAGCATGGACGAACAATCCGGCGTGG-GTCTACTACGGCCTACTTCTCGACAAGCT 18028 ||| | |||| | ||||| ||||| ||| |||| | | | || | || || Sbjct 15647 AAGCCGGCATACAGCAACAACCCGGCCTGGTGTCTG-TGGGATATGCTGACCCACCCGCG 15705 Query 18029 CAACGGATTGGGTGACCGTGTCGATGCTTCGATGGTCGATAAGTGGGCGCTGTACGCAAT 18088 | |||| |||| | ||| | | ||| || || ||||| ||||||||||| | || Sbjct 15706 CTACGGCATGGGGAAACGTCTTGGTGCGGCGGATGTGGATAAATGGGCGCTGTATGTCAT 15765 Query 18089 CGCGCGTTACTGCGACGAACTCGTGTCCGACGGGAAGGGCGGCAAGGAGCCGCGCTTCAC 18148 || | ||||||||| | ||| | ||||| |||||| |||||||||| |||| Sbjct 15766 CGGCCAGTACTGCGACCAGTCAGTGCCGGACGGTTTTAGCGGCACGGAGCCGCGCATCAC 15825 Query 18149 CTGCAA 18154 ||| || Sbjct 15826 CTGTAA 15831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155609316407160