Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq362 100 3e-16 >seq362 Length=339261 Score = 100 bits (110), Expect = 3e-16 Identities = 199/291 (68%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 20177 TCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTC-CCCGGGTCT 20235 || ||||| | || || | ||||||||| || | || || ||||| || |||| || Sbjct 148006 TCAATATGGTTATTATAAAGGTGGGCATCGCCAAGGGTATGGATAAAATCTCCCGACTCC 148065 Query 20236 AAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 | | || ||| || |||| ||| ||| | | || |||| ||||||||||||||| Sbjct 148066 A-GTCCGCAAACCTGTGCAACCATCATAGTCAGTAAGGCATAGGAGGCAATGTTAAAAGG 148124 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGC 20355 || |||| | || ||| | | |||||| ||||||||| || | |||||||| Sbjct 148125 TACCCCCAGAAAAATATCTGCACTTCGCTGATAAAGCTGACAGCTCAGTTTTCCGTCAGC 148184 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGG 20415 ||||||||| || | || || ||||| ||||| ||||| | || ||| Sbjct 148185 TACATAAAACTGGAAAAAGGCATGGCAGGGTGGAAGTGCCATATGTTCTATCTCTGCCAC 148244 Query 20416 GTTCCACGCACACATAATGATTCTTCT---ATCGTGCGGATTATTTTTTAT 20463 ||||| ||| ||| ||| || ||||| |||| ||||| |||||||| Sbjct 148245 ATTCCAGGCAGACACAATAATCCTTCTGGAATCG---GGATTGTTTTTTAT 148292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441295532174200