Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq367 345 1e-90 >seq367 Length=135625 Score = 345 bits (382), Expect = 1e-90 Identities = 649/938 (69%), Gaps = 21/938 (2%) Strand=Plus/Plus Query 2968 GAACCGCACCACCTCGTCACCGATCCAATCGTTGA--TTGCCAACAGGCGGTCCTGCAGG 3025 ||||| || ||||| ||||| | ||| ||||||| | | | ||| | |||||| Sbjct 44951 GAACCTGACAACCTCTTCACCCAGCCACTCGTTGACCTGGGC--CAGCCTCGCCTGCAAC 45008 Query 3026 GGCTTCACCTCGTTGCGCGCGAACACCATCGCCGCCTTCTCCA-CGTCGCCGAATCCGCC 3084 |||| || ||||||| ||| | ||| || |||| | || || | || || ||||| Sbjct 45009 GGCTCCAGCTCGTTGACCGCCCAAACCTCAGCAGCCTCCCGCAACGAC-CCAAAACCGCC 45067 Query 3085 GGTGTTGTTCGGAATGATGCCCATGAGCTGCGGCGGTACGCGGTGCGCGGCGAGCTGGTC 3144 | ||| | ||| | ||||||||| | |||||| || | ||| ||| |||||| | || Sbjct 45068 CGCGTTCTGCGGCACGATGCCCATCAACTGCGGTGGAATGCGCAACGCCGCGAGCAGATC 45127 Query 3145 GTCGCGCGTGACGTTCTTGATGTTCCAGAACTCGTCCTTCGCGGCCACCTCGGACACCGG 3204 ||| || ||| ||| ||||| | ||| |||||||| || || |||||| |||||| Sbjct 45128 GTCACGGCTGATGTTTTTGATCGAGCTGAATTCGTCCTTGGCCGCAACCTCGCTCACCGG 45187 Query 3205 TAGCAACTGGATCCCATCCTTCTTGCCATTGGGCGCGTACATGAACAGGTTGCGGAAATT 3264 | | ||| || || || |||||||| |||||||||| ||||||||||| || || Sbjct 45188 GATGAGCTGAATGCCGTCTTTCTTGCCTGCCGGCGCGTACACAAACAGGTTGCGAAAGTT 45247 Query 3265 GCCCGGCCCCTTGGCACTCTTCATCGCCTCGCGCAGCGTGTCGACGTCCTCCTGCTTCTG 3324 ||| ||||| || | |||||| || |||||| | ||||| |||||| | |||||| Sbjct 45248 GCCTGGCCCTTTCGAGTTCTTCAGTGCGGTGCGCAGTGAGTCGATGTCCTCTTCCTTCTG 45307 Query 3325 CGCCGCATCGGTCATGTACAGGATGAAGCCGGCGTGCGAGCCGTTCTTGTAGTACCGGCG 3384 |||||| |||||||||||||| ||||| ||||| || |||||| ||||||||| ||| Sbjct 45308 CGCCGCGTCGGTCATGTACAGAATGAAACCGGCATGGCTGCCGTTGTTGTAGTACTTGCG 45367 Query 3385 CCGGAACAGCGTGGCCGATTCGTTCAACCACGTG-GCGTT-CAGCGCGGACAGGTATTCC 3442 ||||||||||||||| ||||| | | ||| || || |||||| | ||| | ||| Sbjct 45368 CCGGAACAGCGTGGCGCTCTCGTTGAGC--AGTGCGCTTTGCAGCGCTGCCAGCCACTCC 45425 Query 3443 GGCAGGCCGTACACCTCCTGATTGATGTCCGGTTCCTGGAGGTGGAACACCGAGCCGGCG 3502 ||||||||||| | ||||| ||||| || | || | | |||| | | ||| |||| | Sbjct 45426 GGCAGGCCGTAGATTTCCTGGTTGATATCGGCCTCGCGCAAGTGGCAGATCGAACCGGGG 45485 Query 3503 GCGAA--GGTGTACGGCTGCTGCCAGTTCTGCACaaaaaaaTAGGTGTTCAGGTCGAGCC 3560 || || ||| || | || |||| |||| ||||||| | || ||| | | Sbjct 45486 GCAAATTCATGTTCG--TCCTTCCAGCCACGCACCTGGTAATAGGTCTCCATGTCCACAC 45543 Query 3561 CGCGCCGAACGTACTTGGCCAGAGGCGTGTCGAGCCGGATTGTCCCGCCCAACACGTTTT 3620 | || || | |||||| ||||| || | || | || || || | || ||| | Sbjct 45544 CCCGGCGCATGTACTTCGCCAGTGGAGGCAGCAGGCCCATGGTGTTGCGGAGCATGTTGT 45603 Query 3621 CGCGGCGCTCCAGGTACGCA-TTGCCGAACACC--TGCCAGTCCAGCACCAGGCGCTCGA 3677 ||| |||||||| ||| ||||| ||||| |||||||||| | | |||| | Sbjct 45604 TGCGCTTTTCCAGGTA-GCAGTTGCC--ACACCAGAGCCAGTCCAGGGCGAACTGCTCAA 45660 Query 3678 ACGTCGCGCGCGACAACAGCGGGTGCGGGATGAACGTGCTGACCAGGATATTCCGCTTCA 3737 | | ||| ||||||| |||| || | |||||||| | | || || || ||||| | Sbjct 45661 AGGCTTGGCGACTCAACAGCCGGTGGGGAACGAACGTGCGGGCAAGCATGTTGCGCTTGA 45720 Query 3738 CGTAGACGGCCGAGCTGTGGTGCGCGGCGGCGCGGAACGAGCGCGCCAGGCCATCCCACG 3797 || | | |||| | ||| | || ||| ||| || ||||||||| ||| | Sbjct 45721 AGTTCA-GCCCGACTGGAGGTACACGCTGGCCCGGGTCGTTTTCGCCAGGCCGTCCATGG 45779 Query 3798 GCATGGGCGGTTCATACCACTGGCCCATGCGCATGCACTCGACGTAATCCAGCAACTCGC 3857 ||| || | |||| |||| |||| || | |||||| | ||| || || | ||| | Sbjct 45780 ACATCGGTGTTTCAAACCAACGGCCATTGGCCCAGCACTCCAGGTAGTCGAGGATCTCCC 45839 Query 3858 GCCGGTCCAGCACTTCGACGGGATCGCCGAAAGAGAAC 3895 | | |||| ||| ||||||| ||||||| |||| Sbjct 45840 GGCTATCCAACACGGGAGCGGGATCACCGAAAGTGAAC 45877 Score = 87.8 bits (96), Expect = 4e-13 Identities = 138/192 (72%), Gaps = 8/192 (4%) Strand=Plus/Plus Query 4192 TCCGTCCAGCCGGCGTCGAACTCCAGCCTGCCCTTGCTGATCACGTCGTGCGCCTTGAGC 4251 ||||||||||| || ||||||||||||||||| || |||| ||||||| ||||| ||| Sbjct 46156 TCCGTCCAGCCCGCATCGAACTCCAGCCTGCCGTTTTTGATGACGTCGTAAGCCTTCAGC 46215 Query 4252 ACCAGGGCGGTTTTCACGTCCACGGAATAGGTGAAGCCTTCGGCA--TCCGGACGGAACT 4309 |||||| |||||| || || || ||| |||| | | | | | ||| ||||| Sbjct 46216 ACCAGGCGGGTTTTGACTTCGGGTGAGTAGCTGAA--CGTGGTGATGTTCGGGAAGAACT 46273 Query 4310 TCTGCACCAG--GCGGAACACCGCATCGCCGATGCCGGTCCGGTCGATGCCCACGTAGGC 4367 || |||||| ||| || ||| | | ||| ||||||| ||||| || | ||||| Sbjct 46274 GCTTCACCAGCTGCGCCACGCCGGAAC-CCG-TGCCGGTGATATCGATCCCGATGTAGGT 46331 Query 4368 GACGTCGTAGCG 4379 || |||||| Sbjct 46332 CACCCAGTAGCG 46343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123889792538820