Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq3638 385 1e-102 seq1862 145 2e-30 >seq3638 Length=12846 Score = 385 bits (426), Expect = 1e-102 Identities = 481/663 (73%), Gaps = 6/663 (1%) Strand=Plus/Plus Query 42536 GAGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACG 42595 || ||||||| ||| |||||||||| ||||| || ||||| || |||| || | | Sbjct 3548 GACGCGAGGACCGAGACGCCGCCGATTCCGTCGAGACCGGTGCGAGCACCGAACAGAATG 3607 Query 42596 ACCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCC 42655 | ||||||||| ||||| ||| ||| || | || |||||| || | ||||| Sbjct 3608 ATCTTGTTGCCCGCGCCCGAAGCGAAGGCCAGATGCAGATCCTCGACGCGCATGACGCCG 3667 Query 42656 ACCGCCAGGGCGTTGACCAGCGGATTGGCCTG-ATAGACGGCATCGAACACGGTCTCGCC 42714 | || ||||||||||||||||| || |||| |||| | ||||| || |||||||| Sbjct 3668 GCAGCGAGGGCGTTGACCAGCGGGTTA-CCTGCATAGGACTCGTCGAAGACCGTCTCGCC 3726 Query 42715 GCCGATGTTCGGCAGACCGAGGCAGTTGCCGTAGAAGCTGATGCCGCTGGTGACGCCGTG 42774 ||||||||||||||| |||||| |||| ||||| | || || | ||| |||| Sbjct 3727 GCCGATGTTCGGCAGGCCGAGGGAGTTTCCGTATCCACCGACACCACGCACGACACCGTC 3786 Query 42775 CACGACCCGCGCCGTGTCGGGGTCGTCGGCCGCGCCGAAGCGCAGGGCGTCCATGACCGC 42834 ||||| || || |||||| |||| || || ||||| || || || Sbjct 3787 GACGACGCGACGGGTATCGGGGGCGTCAGCAGCACCGAACCGAAGCTGATCNNNNNNNNN 3846 Query 42835 GACCGGGCGAGCGCCCATGGAGATGATGTCGCGGACGATGCCGCCCACACCCGTCGCCGC 42894 | |||| ||||||||||||||||||||||| ||||| |||||||| Sbjct 3847 NNNNNNNNNNNC----ATGGCCATGATGTCGCGGACGATGCCGCCGACACCGGTCGCCGC 3902 Query 42895 GCCCTGGAAGGGCTCGATGAACGAGGGGTGGTTGTGACTCTCCGCCTTGAACGTGACCGC 42954 |||||| | ||||||| | |||| ||||||||||| ||||| ||||||||||||| || Sbjct 3903 ACCCTGGTAAGGCTCGACGTACGACGGGTGGTTGTGGCTCTCGACCTTGAACGTGACTGC 3962 Query 42955 CCATCCCTCGCCGACGTCGATGACGCCCGCGTTCTGCCCCATCCCGACCATGAGGCGCTC 43014 ||| || || |||| ||||| |||||| ||||||| || || ||| ||| | | | Sbjct 3963 CCAGCCGTCACCGATGTCGACGACGCCGGCGTTCTCACCGATACCGGCCAGCATGTTGGC 4022 Query 43015 GCGCATCTCGTCCGAGACCTTCTGCCCGAACCTCTTGAGGTAGAGCTTGCTCGACTTGTA 43074 |||||||||||| | | ||| ||||| ||||| || |||| |||||||| Sbjct 4023 GCGCATCTCGTCGGTGGTGGTCTTGCCGAAGTATCCGAGGTGGACCTTGGAGGACTTGTA 4082 Query 43075 GGAGCAGTGCTCCGACCACATCACCGAGTACATCGCCAGCTCGCCCGAGGTGGGGCGGCG 43134 ||||||||||| |||||||||||||||||||||||| ||| | ||||| ||||| Sbjct 4083 CGAGCAGTGCTCGCTCCACATCACCGAGTACATCGCCAGTTCGGCGTCCGTGGGACGGCG 4142 Query 43135 GCCGAGGATCTCCTTGATCCTCGCGTACTCGTCGTCCTTGAGGCCCAGCGCCGCGTAGGG 43194 ||| |||||||||||||| | ||||| |||||||||||||| || ||| || | | || Sbjct 4143 GCCCAGGATCTCCTTGATGCGTGCGTATTCGTCGTCCTTGAGACCGAGCTCCTTGAACGG 4202 Query 43195 CTG 43197 ||| Sbjct 4203 CTG 4205 Score = 181 bits (200), Expect = 3e-41 Identities = 292/417 (70%), Gaps = 6/417 (1%) Strand=Plus/Plus Query 42069 CGACGGGGCGCTCGTAGACCGGGCCGTCGACGGCGACCGTGGACGGGTCCACGTCGACGA 42128 |||||||||| | ||| ||||| || ||| ||||| ||| |||| |||||||||| Sbjct 3066 CGACGGGGCGGTGGTAAACCGGACCCTCGTGCGCGACGGTGCGCGGGGGAACGTCGACGA 3125 Query 42129 TCCGCTCTCCCTGCCAGTCGATGACGAGACGGCCGTCGCCGGTGACCTCGCCGAGCACGG 42188 ||| || |||||| |||| ||| | | || ||||||||||||||| ||| Sbjct 3126 CGGTCTCGCCGTGCCAGGAGATGGTGAGGTGCTCACCGTCGGTGACCTCGCCGATGTCGG 3185 Query 42189 AGGTCTCCACCTCCCACTTGCCGGTGACGGCGAGGAACGCGTCGAGCTTCGCAGGCGAGA 42248 || | || |||||||| | ||| | | |||||| |||| ||| | |||| || Sbjct 3186 TGGCCAGGACGTCCCACTTCTTGCAGACCTCCATGAACGCATCGACGTTCTCGGGCGTGA 3245 Query 42249 CGATGGCCATCATCCGCTCCTGCGACTCCGACATGAGGATCTCCTCGGCCGTGAGCGAGG 42308 | | ||| ||| ||||||||||| || | ||| | ||||||||| | | | Sbjct 3246 CCACGGCGCACATGCGCTCCTGCGATTCGCTCGAGAGCA---CCTCGGCCGGGGTCATGC 3302 Query 42309 -GGT--CGCGGAGGAGCACGTTGTCGAGCGAGACGTGCATTCCGCTGTTGCCGTTGGCGG 42365 ||| |||| | | || || ||||| || |||||| |||| || |||| |||| Sbjct 3303 CGGTGGCGCGCATCGGAACCTTCTCGAGGTTGATGTGCATGCCGCCGTCGCCGGCCGCGG 3362 Query 42366 CGAGCTCGCTCGTGGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCA 42425 | |||||| ||||||||||| | || || | |||||||||||||| | |||| | Sbjct 3363 CCAGCTCGGAGGTGGCGCAGGACAGCCCGGCGCCGCCGAGGTCCTGGATGCCGACGACGA 3422 Query 42426 GCTCGTCGCGGTACAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGAAGGGGT 42482 | || | ||| || || || ||||||||||||||||||||||||| ||| |||| Sbjct 3423 GGCCGGCCTTGTAAAGGTCGAGACAGCACTCGATGAGCACCTTCTCGGTGAACGGGT 3479 Score = 179 bits (198), Expect = 1e-40 Identities = 203/272 (75%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 41495 CCCGAGGGTATGCGGCGCGAGACGTCGTCGATGAGGCCGAGCACGCCCACGAGAGGAGTG 41554 |||| || |||||||| ||||||||||| | ||||| ||| | || | || || Sbjct 2515 CCCGTCGGGATGCGGCGGTGAACGTCGTCGATCACACCGAGGACGGCAACCACCGGCGTC 2574 Query 41555 GGGTGGATCGGCACGTCGCCGGTCTGGTTGTAGAACGAGACGTTCCCGCCCGTGACCGGG 41614 || |||| | | | ||||||||||||||||| |||||| ||||| ||||| ||| Sbjct 2575 GGCAGGATTGCCGTGGATCCGGTCTGGTTGTAGAAGCTGACGTTGCCGCCGGTGACGGGG 2634 Query 41615 GTGCCCAGGGCGTAGCAGCCGTCGGCGAGCCCGTCCACCGTCTGACCGAACTGCCACATG 41674 |||| |||| | |||||||||||| || ||| || | ||| ||||||||||||| Sbjct 2635 ATGCCGAGGGTGGCGCAGCCGTCGGCAAGGCCGCGAACGGCCTGCTGGAACTGCCACATG 2694 Query 41675 ACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCGCAGTGGGCACGGCG 41734 || | || | ||| || || |||||||||||||||| || ||| || ||||| ||| Sbjct 2695 ACACCCGGGTCCTCGGGAGAACCGAAGTTCAGGCAGTTGGAGACGGCCTTGGGCGTTGCG 2754 Query 41735 CCGGTGACCGCGACGTTGCGGTAGGCCTCGGC 41766 || ||||| || ||||||||| | |||||||| Sbjct 2755 CCCGTGACTGCCACGTTGCGGAAAGCCTCGGC 2786 >seq1862 Length=5913 Score = 145 bits (160), Expect = 2e-30 Identities = 261/378 (69%), Gaps = 4/378 (1%) Strand=Plus/Plus Query 11006 ATGGCAGGGGAGACCGTGATCACGGTCGTGGGGAACCTCACTGCAGACCCTGAGCTGCGT 11065 ||||| || || ||| | ||||| ||| | || ||||| || || || ||||| || ||| Sbjct 5186 ATGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCCTGAACTTCGT 5245 Query 11066 TACACGCAGAACGGGCTGCCG--GTGGCGAACTTCACCATCGCATCGACGCCGCGCACCT 11123 | ||| | | |||| ||||| || || |||||||| | || || ||||| || |||| Sbjct 5246 TTCACCCCGG-CGGG-TGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTACCT 5303 Query 11124 TCGACCGTCAGGCGAACGAGTGGAAGGACGGCGAAGCGCTGTTCCTCCGTGCGTCCGTGT 11183 |||||||| | | || || ||||| |||||||| ||||||||| | ||| | | | Sbjct 5304 TCGACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATGCGTTGCAACATCT 5363 Query 11184 GGCGCGAGTTCGCGGAGCACGTGGCGGGTTCGCTGACCAAGGGCATGCGGGTCATCGCAT 11243 ||||||| || ||| |||| |||| ||||| || || || |||| Sbjct 5364 GGCGCGAAGCAGCCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGAGTAATCGTGA 5423 Query 11244 CCGGACGCCTGAAGCAGCGCTCCTACCAGGACCGCGAGGGCAACAACCGCACCGCGATCG 11303 ||| || || |||||||| || ||| | ||||||||| | || || || | ||| Sbjct 5424 GCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCG 5483 Query 11304 AGCTCGAGGTGGACGAGATCGGCCCGAGCCTCCGCTACGCGACGGCGCAGGTCACCCGGG 11363 ||||||| || || || ||||| || || ||||| ||||| |||||| | || Sbjct 5484 AGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAGGTCAACAAGG 5543 Query 11364 CCGCCCGCCGTGACGGCG 11381 || ||| ||| ||||| Sbjct 5544 CCAACCGTGGTGGCGGCG 5561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148221745233870