Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq3834 288 4e-73 seq3754 84.2 1e-11 >seq3834 Length=3552 Score = 288 bits (318), Expect = 4e-73 Identities = 692/1030 (67%), Gaps = 59/1030 (6%) Strand=Plus/Minus Query 59889 GGATTGCCTCGGTTAGCTGCATCATCGAACATAAGGTAAGGATAGCCAGACTCAAACTGA 59948 || ||||| ||||| | | || |||||||| | ||| || ||||| || || ||||| Sbjct 2255 GGTTTGCC-CGGTTCACCGTGTCCTCGAACATGATGTAGGGGTAGCCCGATTCGAACTGC 2197 Query 59949 ACCTCTGCGATGGTCTGGAACAGCTTTCGAGCGTCGATAAAGGTCTTAGCGA-TCCTATC 60007 | || |||| ||||||||| | || ||||| | ||| || ||| |||| | | | Sbjct 2196 AATTCGGCGACGGTCTGGAAGAACTCGCGAGCTTTGATCTTGGACTT-GCGAATTCGCTT 2138 Query 60008 ATCTTTTAGCCACGTGTCGTACATCTCGGTTACGGAGAACTCGGACAGTGACTTTCCGTA 60067 || | | | | || |||| |||||| ||| || ||||| | | |||||| Sbjct 2137 GTCGTCGACCATCTCGTAGTACTTCTCGGAGACGTTGATGTCGGAGAACGGAACTCCGTA 2078 Query 60068 CACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCAAGGCG 60127 | | || ||| || || ||||| ||| ||| |||| ||| ||| || || Sbjct 2077 GATGCGCTCGACGTCGTACGGCGAGAACAGGTACATGTCCTCGTTCTTCTTCGCCAGTTC 2018 Query 60128 GAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTCTCGTC 60187 |||||||| || || | | || || || ||||| ||||| |||||||| |||||||| Sbjct 2017 GAACGTGATGTCCGGGATCACGACGCCGAGTGAGAGCGTCTTGATACGGATTTTCTCGTC 1958 Query 60188 GGCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTCAAATA 60247 |||||| ||||||||||| || |||||| ||||||||||||||| || | || || Sbjct 1957 GGCGTTCTCACGCTTGGTGTCGAGGAACCGGTAGATGTCGGGGTGGTGCGCATGCAGGTA 1898 Query 60248 TACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCTTCTAG 60307 || || || |||||||| | ||||||| ||||| | ||||||||| || || || Sbjct 1897 CACAGCACCGGCGCCCTGACGCGCACCCAACTGGTTGGCGTAGGAGAACGAGTCCTCGAG 1838 Query 60308 AATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCGGAGCT 60365 || |||||| | |||||||| || || ||| ||||||| | ||| ||||| || Sbjct 1837 AAGCTTCATGATCGGGATGACACCCGAACTCTG--GTTCTCGATCTTCTTGATCGGGGCG 1780 Query 60366 CCTGCCTCGCGGAGGTTGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACAGCTGG 60425 || ||| || | ||||| || | | | ||||||||||| ||||| |||| ||| Sbjct 1779 CCGTGCTCACGAACGTTGGTGAGCAGCAAGGCAACTCCGCCACCGCGCTTGGACAACTGC 1720 Query 60426 AG---AGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGATG 60482 || |||| ||| || |||||||||||| ||||| |||| | | | || | | Sbjct 1719 AGTGCCGAGT--TGATGGA-GCGACCGATGGACTCCATGTTGTCTTCGATACGAAGCAGG 1663 Query 60483 AAGCATGATACTGGCTTGC----CTGCGTCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGT 60538 ||||| || || |||| | |||| || | |||| ||| ||||| ||||| || Sbjct 1662 AAGCAGGACACGGGCTCACCGCGCTGCTTCTTG----CCCGAGTTCAGGAACGTCGGGGT 1607 Query 60539 TGCAGGCTGGAAGATTCCCTTGATAATGAGATCCACAAGGGACTCAGCGTGCTCGAAGTC 60598 || ||||||||| ||| ||| || || || || || || | | ||| Sbjct 1606 GGCGGGCTGGAAGCGTCCGGCGATGATCTCGTCGACGAG---TTCGACG---GCCAGGTC 1553 Query 60599 TTCGCTGTAGTGGATGGCC---GTGAG---TACC------ACTCGATCTTCGTAGCGCTC 60646 |||| || || |||| ||||| ||| || ||||||||| | ||||| Sbjct 1552 TTCGTTG-CCTG--CGGCCAGGGTGAGCGCAACCATGCAGACACGATCTTCGAAACGCTC 1496 Query 60647 GTAATAGCGCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCC 60706 | |||||||| || ||| ||||| | | ||||||| | ||| |||| | || || Sbjct 1495 GAGGTAGCGCTTACCGTCGAAGGTCTTGAGCGTGTAGGAGGTGTAGTACTTGAATGCACC 1436 Query 60707 CATGTAGGTCTTGAAGCGGAACTTGTGTCCGTAGGCCTGTTTCATGAGTCTCTT----TA 60762 || | | ||| |||||||||||| | |||| || || | || || ||| | Sbjct 1435 CAGGAACGTCGGGAAGCGGAACTTCTTGGCGTACGCGTGATCGATCAGGAACTTCACGAA 1376 Query 60763 GGTCCTCGAAGCCGTAGCGAAGGACGACATC---CTTGTCCCATAGTTGGACTTCCTCTG 60819 || | || ||| || || || || || || |||||| |||||| Sbjct 1375 AGTACGTGA----GTACTGATCGAGAACCTCGGGCTCGT--AATAGTT----TTCCTCGA 1326 Query 60820 TGAGGTGATCCACCTTCTCCTCTAGGGAGTGAAAGAATACGGTGTTCTTGTTGACGTGCT 60879 ||||| |||| |||||| || ||| ||| ||||| |||||||||| ||||||||||| Sbjct 1325 CGAGGTAGTCCAGCTTCTCGTCGAGGTTGTGGAAGAACACGGTGTTCTGGTTGACGTGCT 1266 Query 60880 CCAGGAAGTA 60889 || |||||| Sbjct 1265 GCAAGAAGTA 1256 Score = 140 bits (154), Expect = 1e-28 Identities = 279/409 (68%), Gaps = 12/409 (3%) Strand=Plus/Minus Query 58409 GCAACCTTCCACTTCCGTGCCTTCTA---CCGACTTA-GCAGAGGTTCGGATGTAGTACA 58464 ||| || || || || |||||||| | || || | ||||| ||||||||||||| Sbjct 3253 GCAGCCCTCGACCTCGGTGCCTTCGAGTGCCATCTGACGCAGA----CGGATGTAGTACA 3198 Query 58465 GAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCGCGTTGTCG 58524 | | ||| | |||||| |||||||||||||| ||| ||||| || || || | Sbjct 3197 GCGTCTTGATGCCCTTACGCCACGCGTAGATCTGCGCCTTGTTGATGTCGCGAGTGGTTG 3138 Query 58525 CTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGATGCTACAG 58584 | || || |||||||||||| || |||| ||||||||| || | | ||| ||| Sbjct 3137 CGGTGTCCTTGAAGAACAGCGTCAGCGACAGGCCCTGGTCGACGTGTTGCGTTGCGGCAG 3078 Query 58585 CGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CTATCAATTGATTCTAC 58642 | || | || | |||| | ||||| |||| || || | | | || | Sbjct 3077 CATAGGTGTCGACGATCTTCTCGTACCCGATTTCGTAGGCATCCTGGTAGT--ACTCCAG 3020 Query 58643 ATTCTCATTGGTCACTCCGTACTGAGGGTAATAGACTCGACCAAGCTTACCCTCCTTGCG 58702 || || ||||||| | | ||||| ||||| || || | ||| || |||||||| Sbjct 3019 GTTGTCGTTGGTCAGGTAGGGCGCCGGGTAGTAGACGCGGCCGATCTTGCCTTCCTTGCG 2960 Query 58703 AACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAATGTACGAGAT 58762 | ||| | || | ||| ||||| || ||| |||| | ||| ||||||||||| Sbjct 2959 GATCTCGATCTTCGACGCCACCGGGTGGATGGAGCTGGTGGAGTAGTTGATGTACGAGAT 2900 Query 58763 AGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACCATGC 58811 |||||||| || |||| ||||| |||||||||||||| ||||| ||| Sbjct 2899 CGAGCCGGTCGGCGGGACGGCCTGAAGGTTCTGGTTGTAGATACCGTGC 2851 >seq3754 Length=1683 Score = 84.2 bits (92), Expect = 1e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 57378 CCTTCTGGAATTTATATCCCAAGTAATAGCCATGCACACCCTCGTCTCTCATGATAAGGC 57437 |||||||| | || || || | ||| || || |||||| ||||||| | ||||| |||| Sbjct 871 CCTTCTGGTACTTGTAGCCGATGTAGTACCCGTGCACAGCCTCGTCGCGGATGATGAGGC 812 Query 57438 GGATAAGGTCCGCTGTGTTGGTGAGTTTACCTTGAGAGGCGAAGTGAAGAGGGAGATAGA 57497 |||| ||||| || ||||||||||| || || | |||| ||| || || ||| Sbjct 811 GGATGAGGTCTGCGGTGTTGGTGAGCTTGGCTCGCGAGGACCAGTACGTCGGCAGGGAGA 752 Query 57498 AGCCGGTATAGAACAAGAA 57516 |||||| ||||| | ||| Sbjct 751 AGCCGGAGTAGAAGAGGAA 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225689471404700