Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq451 181 2e-40 seq420 120 7e-22 seq48 111 4e-19 seq593 98.7 2e-15 seq1623 96.9 8e-15 seq355 89.7 1e-12 seq98 84.2 5e-11 >seq451 Length=202505 Score = 181 bits (200), Expect = 2e-40 Identities = 341/500 (68%), Gaps = 6/500 (1%) Strand=Plus/Plus Query 167024 ATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCATCACACAT 167083 ||| |||||||| || |||| ||||||||| || || || ||||| || |||||||| Sbjct 166549 ATTGGTTGGCATGACGGAGATGAAATTACAACCGTACTGGGCCCTGTAGGCGTCACACAT 166608 Query 167084 CTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGAAATCCTGT 167143 | || ||||| ||||| || || || || |||| || || ||| || || || || Sbjct 166609 TTTAATACCGGCAATTTTTGCAATGGCATAGGGTTCATTGGTTTCTTCCAGCAAGCCAGT 166668 Query 167144 CATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAACTGCTACC 167203 | || ||||||||||| | || | | | ||| || |||||||| |||||| ||| Sbjct 166669 AAGAAGGTATTCTTCCTTCAGGGGCTGTGGGGCTAACTTCGGGTAAATACAACTGGAACC 166728 Query 167204 GAGAAACACGAGTTTTTTCACTCCGAACATTTT---GGACGCATGAATGACATTCGTCTG 167260 || |||| | ||||| | ||| |||| ||| |||| || ||||| |||| Sbjct 166729 CAGGAACATTAACTTTTTGATGCCG---TTTTTCCATGACTCATGGATCACATTGTTCTG 166785 Query 167261 AATCATCAGATTATCGTGAATAAAATCGCCCCCGAAGGAGTTGTTCGCGTGAATACCTCC 167320 ||| ||||| |||| || |||||| ||| | ||| |||||| || ||| || || Sbjct 166786 AATAGCAAGATTTTCGTAAAGAAAATCTGCCCTGTAGGTGTTGTTGGCAATAATTCCGCC 166845 Query 167321 TACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAACGCGTTCAC 167380 ||||| || || ||||||||||| || || ||| ||| | || || || | | || Sbjct 166846 CACTTTGGCCGCAGCGAGAAATACATACTCCGGTTTTTCCTTTTCAAAGAAATCACTTAC 166905 Query 167381 TTCTCGTTGGTTTGTCAGGTCGAGATCTTTTGACGTTCGAGTGACGATGTTCATATATCC 167440 | | |||| || ||||| || | ||| || || || | | || || | || Sbjct 166906 TGCCTGTTGATTGCGGAGGTCCAGCTGGGCTGATGTCCGGGTCAAAAGATTATTAAAACC 166965 Query 167441 TTCTTTTTGCAAGAGTCTCATAAGAGCGCTTCCGACCATTCCTGTGTGACCTGCCACGTA 167500 ||||||||||| || || || || |||||||| |||||| || || || Sbjct 166966 TTCTTTTTGCAGTTTTCGGTAAATCGCAGAACCCACCATTCCACGGTGACCGGCAACATA 167025 Query 167501 TATCTTCGAGTGTTTTTCCA 167520 ||| || ||||||||||||| Sbjct 167026 TATTTTTGAGTGTTTTTCCA 167045 >seq420 Length=40905 Score = 120 bits (132), Expect = 7e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | |||| ||| || ||||| || || ||||||| Sbjct 13774 TCCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 13833 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | ||| || || || ||||| ||||| |||||| ||| Sbjct 13834 TAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGG 13893 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTA 288424 ||||||||| || || ||||| || | || || || || || | || | || ||| | Sbjct 13894 GATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTGTCTGATC-CTTCGA 13952 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || || ||||| ||||| || |||| |||||||||||| ||||||||| Sbjct 13953 CCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCATT 14002 Score = 120 bits (132), Expect = 7e-22 Identities = 172/240 (72%), Gaps = 7/240 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||||| | |||| ||| || ||||| || || ||||||| Sbjct 14002 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGA 14061 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || |||||||| |||| ||| ||||| || ||||| || | |||||| ||| Sbjct 14062 AAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGG 14121 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||||||||| || || ||||| || | || ||||| || || | || || | || Sbjct 14122 GATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCC---TC 14178 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG-TTAT 288481 || || || ||||| ||||| || |||| |||||||| || || ||||||||| |||| Sbjct 14179 GACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATTATGATTAT 14238 Score = 102 bits (112), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||||| | |||| || |||||||| || || ||||| | Sbjct 13546 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGA 13605 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | ||| || || || ||||| || || |||||| ||| Sbjct 13606 GAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGG 13665 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTA 288424 || || || ||||| || || || | || ||||| || || | ||| | || | | | Sbjct 13666 AATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCT-CAA 13724 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | || | || || ||||| || || |||||||||||||| ||||||||| Sbjct 13725 CCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATT 13774 Score = 96.9 bits (106), Expect = 8e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | || || | ||||| || |||||||| || || ||||| Sbjct 13316 TGACCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCA 13375 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || || || | ||| || || || ||||| || || || || | Sbjct 13376 GAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGT 13435 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTC 288422 ||||||||||| || || ||||| || | || || || || || | || | || || Sbjct 13436 GGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATC-CCTC 13494 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| || || |||||||||||||| ||||||||| Sbjct 13495 AACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 13546 >seq48 Length=44992 Score = 111 bits (122), Expect = 4e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | ||||| | |||| || || ||||| || || ||||||| Sbjct 22175 TCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGA 22116 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| || || || | ||| || || ||||| || ||||| |||||| ||| Sbjct 22115 TAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGG 22056 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTCTA 288424 ||||||||| || || ||||| || | || ||||| || || | ||| | || || | Sbjct 22055 GATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTATCAGATC-CCTCGA 21997 Query 288425 CTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | || || ||||| ||||| || |||| ||||| ||||| || ||||| ||| Sbjct 21996 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCATGATG 21944 Score = 100 bits (110), Expect = 7e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || || || ||||| | ||||| | |||| || || ||||| || || ||||| Sbjct 22861 TGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCA 22802 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | ||| ||||| || || || | || || || ||||| || ||||| |||||| | Sbjct 22801 GAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGT 22742 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTC 288422 ||||||||||| || || || || || | || ||||| || || | ||| | || || Sbjct 22741 GGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATC-CCTC 22683 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || || ||||| || || |||||||| ||||| ||||||||| Sbjct 22682 AACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCATT 22631 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || ||||| | || || | ||||| || || ||||| || || ||||||| Sbjct 22631 TCCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGA 22572 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || || || | || || || || ||||| || | |||||| ||| Sbjct 22571 CAATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGG 22512 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 ||||||||| || || ||||| || | || || || || || | || || | || Sbjct 22511 GATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCC---TC 22455 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || |||||||||||||| |||||||| Sbjct 22454 GACTTCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 >seq593 Length=58250 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || ||||| | ||| ||||| || || || | ||| ||||| || || Sbjct 29340 TTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAA 29281 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||| ||||| |||||| |||||||||||| || || || || || | || || || Sbjct 29280 GATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGACATT 29221 Query 288402 TTCTATAGAATC-GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 || || | || | || || ||||| || ||||| ||||| || |||| ||||| | Sbjct 29220 GTCGATGGTGTCAGATC-CCTCAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTA 29162 Query 288461 CGAATATCTGCAT 288473 | || || ||||| Sbjct 29161 CAAAGATTTGCAT 29149 >seq1623 Length=5066 Score = 96.9 bits (106), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || || | ||||| || || |||||||| || ||||||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | ||| ||||| || ||||| ||||| |||||| ||| Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| || || ||||| || | || ||||| || || | ||| || | || Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCC---TCA 278 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| || ||||| || || || || || ||||| Sbjct 279 ACCTCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq355 Length=81473 Score = 89.7 bits (98), Expect = 1e-12 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||||| || || || || || || | ||| ||||| || ||||| ||||| Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 288352 TGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAA 288411 || ||| |||||||||||| || || ||||| || | || ||||| || |||| Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATAGTG 81354 Query 288412 TC-GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTG 288470 || | || ||| || || || ||||| ||||| || || | ||||| || || || || Sbjct 81353 TCAGATC-CTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTTG 81295 Query 288471 CAT 288473 ||| Sbjct 81294 CAT 81292 >seq98 Length=772300 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/170 (72%), Gaps = 8/170 (5%) Strand=Plus/Minus Query 52877 GAGAAATTTTACTTTACACCGAGTAGCAATCCG-TATGAAGTTTTTGAAACGAAATATGG 52935 ||||||||||| ||||| || || | | | ||| |||| ||| |||| || |||| Sbjct 403152 GAGAAATTTTATTTTACCCC-AGGCGATTTAGGCTATAAAGTATTTAAAACCAAGTATGC 403094 Query 52936 AAAACTAGGCGTGCTGATTTGCTGGGATCAGTGGTTCTCTGAAGCAGCGAAATGTCTG-- 52993 ||| | || ||||||||||||||||| ||||||| | |||||||| | | ||| Sbjct 403093 CAAAATTGGTGTGCTGATTTGCTGGGACCAGTGGTATCCCGAAGCAGC---ACGGCTGAC 403037 Query 52994 -GCTCTAGAAGGCGCTGATTTTATTGTATACCCCACCGCCATCGGCTCGG 53042 || || || || |||||| | || ||||| ||||| ||||||| || Sbjct 403036 CGCGCTGATGGGTGCAGATTTTCTGGTTTACCCGACCGCAATCGGCTGGG 402987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179442723920390