Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq404 197 2e-45 seq377 129 7e-25 seq208 109 7e-19 >seq404 Length=78127 Score = 197 bits (218), Expect = 2e-45 Identities = 611/942 (65%), Gaps = 24/942 (3%) Strand=Plus/Plus Query 114455 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 114514 ||| |||| || ||||| || || || || || ||||| | || || | ||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTG 49009 Query 114515 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 114574 || | | ||| || || || | || || | || |||||||| | |||| ||| ||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 114575 GACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGAC 114634 ||||| | || || || |||||||| || || ||||| || || ||||| | || ||| Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 114635 TTGAGAATAGCCTTCCAGACATC---GGC-------GGCTGGC-ACAGTGGCGTTGGCTC 114683 | || ||| | ||||| ||| ||| | || || || | | | | || | Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGGTG 49189 Query 114684 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGA 114743 ||| ||||| |||||||| || ||||| || ||| | || | || Sbjct 49190 GCC--------TCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCCCAGCAATCAGCGA 49241 Query 114744 GCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCA 114803 | ||||| |||| | || || ||||| | ||| | | |||| ||||||| || Sbjct 49242 GACCTGGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCA 49301 Query 114804 TGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCC 114863 | ||||| || | | |||||| || | ||||| || || || ||||| | | Sbjct 49302 TAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTC 49361 Query 114864 CCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACA 114923 | || || || | || | || ||||||| ||| |||||||| || || ||||| | Sbjct 49362 CGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGA 49421 Query 114924 CCGCGATTGACCCCTTACGA---CGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAA 114980 || | | ||||| || | ||| | |||| || || | || ||| | || | Sbjct 49422 TGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGA 49481 Query 114981 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACT 115040 | ||||||||||| |||| || ||| | ||| || || || || || ||| || Sbjct 49482 ACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAAC 49541 Query 115041 TATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 115100 || | || | |||| | |||||| || || ||| |||| ||||| | | Sbjct 49542 GGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGGG 49601 Query 115101 CGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGG 115159 |||| | | |||| | ||||||| || |||||||||||| |||| || || || |||| Sbjct 49602 CGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTG-GACAAGG 49660 Query 115160 AAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGG 115219 ||||| ||||||||||||| || || | ||| ||||||||||| || |||||| Sbjct 49661 AAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTGG 49720 Query 115220 ATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCG 115279 | || | ||||| | || || |||||||| | | | ||| |||||| | ||| Sbjct 49721 GTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCCG 49780 Query 115280 TGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 115339 || ||||| | ||||| ||||| | ||||| ||||| || || | || | ||| Sbjct 49781 TGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTCG 49840 Query 115340 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAA 115381 | | || | ||| |||||||||||||| |||||| Sbjct 49841 ATGCGGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAAA 49882 >seq377 Length=20736 Score = 129 bits (142), Expect = 7e-25 Identities = 286/420 (68%), Gaps = 12/420 (3%) Strand=Plus/Minus Query 10738 CAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCG 10797 ||| |||| ||||| ||||| | | ||| | | |||| | || || || || || Sbjct 15175 CAAGATCTGTTCGCGGCCGCGGATATCGGGCAAGCCGACGGACACCTGGCGGTCGAAACG 15116 Query 10798 ACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAAC 10857 || || || || || || | ||| || | || |||||| ||||| || | ||| | Sbjct 15115 GCCCGGACGCAGCAGCGCCTTGTCGAGCACGTCGGCGCGGTTGGTCGCGGCCACGACGAT 15056 Query 10858 GATGCCCGTCT-CGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTT 10916 || ||| | | || | ||||| || |||||||| || | || || | ||| |||| Sbjct 15055 GACGCCGGAGTTCGCT-TCAAAACCGTCCATCTCGACCAGCAACTGGTTCAGGGTCTGTT 14997 Query 10917 CGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAAT 10974 |||| || ||||| || | ||| || |||| ||| || ||||| ||||| || Sbjct 14996 CGCGCTCGTCATTGCCG--CCGCCCATGCCGGCACCGCGGTGGCGGCCGACAGCGTCGAT 14939 Query 10975 TTCATCGATGAAAACGATACACGGTTGAT--TTTCACGGGCAACTTCAAAGATATCTCGG 11032 ||||||||||||| ||| ||||| || ||| || | ||| || || || ||| Sbjct 14938 CTCATCGATGAAAATGATGCACGGCGAATGCTTTTTCGCGTT--TTCGAACATGTCGCGG 14881 Query 11033 ACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GAT 11091 || | |||| || || || || ||||||||||| || | || ||||| || | || Sbjct 14880 ACACGGCTGGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAACCGGAA-ATCGAGAA 14822 Query 11092 GAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| || || |||| ||| || |||||||| || || || ||||| || ||||| || || Sbjct 14821 GAACGGCACCTTGGCTTCGCCGGCGATGGCGCGCGCCAGCAGGGTTTTACCCGTGCCCGG 14762 >seq208 Length=140336 Score = 109 bits (120), Expect = 7e-19 Identities = 258/380 (68%), Gaps = 16/380 (4%) Strand=Plus/Minus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 || || ||| ||||| || || || || || | ||| ||| || | || ||||| Sbjct 87628 GACCTGACGGTCAAAACGGCCCGGACGCAGCAACGCGGGGTCGAGTACGTCTGGACGGTT 87569 Query 10840 CGTCGCCGCGATGACAACGATGCCCGTC--TCGTTATCAAAGCCATCCATCTCAGTCAAG 10897 || || ||||| || | |||||| ||| || || |||||||| ||||||||| || Sbjct 87568 GGTTGCAGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCAACCAGC 87511 Query 10898 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTT 10955 | || || | || || || || ||||||| || | ||| || || | || | Sbjct 87510 AACTGGTTAAGCGTCTGCTCACGCTCATCATGACCG--CCGCCCATGCCGGCGCCACGAT 87453 Query 10956 GCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGT---TGATTTTCACGGG 11012 | ||| |||||||| |||||||||||||| | ||| ||||| || || | || Sbjct 87452 GGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGTGCTTCTT---GG 87396 Query 11013 CAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAAT 11072 | ||| || ||||| || || | ||||||| ||||| ||||||||||| || || | Sbjct 87395 CCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACAAACATTTCGACGAAGT 87336 Query 11073 TGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGG 11131 || ||||| || | || ||| || || |||| ||| || || ||||| ||| | Sbjct 87335 CGGAACCGGAA-ATGGTGAAGAAAGGTACTTTGGCTTCGCCGGCAATGGCCTTGGCCAAC 87277 Query 11132 AGGGTCTTCCCCGTCCCAGG 11151 ||||| || || || || || Sbjct 87276 AGGGTTTTACCGGTACCTGG 87257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597249025785400