Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq420 96.9 4e-15 seq593 93.3 5e-14 seq48 93.3 5e-14 seq2393 84.2 2e-11 >seq420 Length=40905 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | ||||| || | ||| |||||||||||| ||||| || | Sbjct 14003 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAA 14062 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| ||||| ||||| ||||| || ||||||| || || |||| ||| Sbjct 14063 AGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGG 14122 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | |||||||| ||| || |||| ||| | | | ||||| || | || Sbjct 14123 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATGGTGTCTGAGCCC---TC 14178 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | |||||||| ||||| || | ||||| ||||||||||||||| Sbjct 14179 GACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCATT 14230 >seq593 Length=58250 Score = 93.3 bits (102), Expect = 5e-14 Identities = 163/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 41976 TATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 42035 ||| |||| || | | ||| | |||||||| | || |||||||||||| ||||| Sbjct 29837 TATTGACCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAG 29778 Query 42036 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 42095 || | ||||| || | || || || ||||| || || || ||||| || || || ||| Sbjct 29777 TCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCG 29718 Query 42096 GCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTC 42152 | ||| | | |||||||||| ||| || |||| | | | ||||| || | Sbjct 29717 GGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCC 29658 Query 42153 GATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || | || || || ||||| || || |||||||||||||||||||| Sbjct 29657 ---TCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||| | || ||| | |||||||| | || ||||||||||| ||||| || | Sbjct 29604 ACCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGA 29545 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || || ||||| || ||||| ||||||| || || |||| ||| Sbjct 29544 GAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGG 29485 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC-GCTCGATTCC 42158 | | ||||||| | ||| | || || | | | | | | | ||||| | || || Sbjct 29484 AATTCCTTCCTTGT-CTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATC-CCTCG 29427 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || || || ||||| || || ||||||||||| |||||||| Sbjct 29426 ACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||||||||| ||||| |||| || || || | || || || ||||| || || || Sbjct 29339 TCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAG 29280 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 ||||| || || || |||| ||| | | ||||||| | ||| | || || |||| | Sbjct 29279 ATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGT-CTTGAATCTTGGTCTTGACATT 29221 Query 42137 CGCCACCGTGTC-GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | ||||| | || || || || | |||||||| || || || | ||||||| Sbjct 29220 GTCGATGGTGTCAGATC-CCTCAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTA 29162 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 29161 CAAAGATTTGCAT 29149 >seq48 Length=44992 Score = 93.3 bits (102), Expect = 5e-14 Identities = 173/245 (71%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 41968 TATTAATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAA 42027 ||||| |||| ||||||| | | ||| | ||||| || | || ||||||||||| Sbjct 22870 TATTA--TTATTGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAA 22813 Query 42028 TATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCT 42087 | ||||| |||| || || || | || || |||||||| |||||||| ||||| || | Sbjct 22812 TGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTT 22753 Query 42088 GCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGT 42145 | || |||| ||| | | ||||||| | ||| | || || |||| ||| | | | || Sbjct 22752 GTTGATCGGGTGGGATTCCTTCCTTGT-CTTGAATCTTGGTCTTGA-CGTTGTCGATGGT 22695 Query 42146 GTC-GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTT 42204 || | || || || || | || || || ||||| || || |||||||| || || | Sbjct 22694 ATCAGATC-CCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCT 22636 Query 42205 GCATT 42209 ||||| Sbjct 22635 GCATT 22631 >seq2393 Length=1004 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033 ||||| | ||||| | | || | |||||||| | |||| ||||||||||| |||| Sbjct 864 TTTATTGTCCTCCACGAAGGCGGAGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGT 923 Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093 | || | ||||| || |||| || || ||||| || ||||| ||||||| || |||| Sbjct 924 AGTCGGAAAGAGTGCGACCGTCTTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGT 983 Query 42094 CGGCTGGCACGCTCTCCTTGT 42114 ||| ||| | | ||||||| Sbjct 984 CGGGTGGGATTCCTTCCTTGT 1004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543117703809200