Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq48 120 3e-22 seq593 118 1e-21 seq420 114 1e-20 seq2393 87.8 2e-12 seq456 86.0 6e-12 >seq48 Length=44992 Score = 120 bits (132), Expect = 3e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| || | || |||||| | || || |||||| Sbjct 22834 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGC 22775 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || ||||||| || || || ||||| || |||||||| || ||||| || || Sbjct 22774 TTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTG 22715 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | || || || | ||| | |||||||| || Sbjct 22714 GTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTGCCAGTG 22655 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||| ||||||||||| |||||| Sbjct 22654 AGAGTCTTTACGAAAATCTGCATT 22631 Score = 109 bits (120), Expect = 5e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||| |||||||| || | | ||||| | || || || ||| Sbjct 22150 TGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCGAGTTGC 22091 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || ||||||| || || || ||||| || |||||||| || ||||| || || Sbjct 22090 TTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22031 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | || || || | || | ||||||||| ||| Sbjct 22030 GTCTTGACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTGCCAGTC 21971 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || ||||||||||||||||| Sbjct 21970 AATGTCTTTACGAAAATTTGCAT 21948 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || |||||||||||||| || | | ||||| | || Sbjct 22615 AGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCC 22556 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | ||||| | || || ||||| || |||||||| || ||| Sbjct 22555 TCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCT 22496 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | | || ||||| | || | ||| Sbjct 22495 TGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTC 22436 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||| || |||||||| ||||| Sbjct 22435 TTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || ||||||||||| || || | | ||||| |||| || || ||| Sbjct 22378 TGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCGAGTTGC 22319 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | ||||| || ||||| ||||| ||||| || || || ||||| || || Sbjct 22318 TTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGAATCTTG 22259 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||| || | |||||| | || || || | || | |||||| || ||| Sbjct 22258 GTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTTCCAGTC 22199 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 || || || || || || |||||| Sbjct 22198 AATGTCTTGACAAAGATCTGCATT 22175 >seq593 Length=58250 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||||||||| || | || |||||| | || || || ||| Sbjct 29351 TGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGC 29292 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 29291 TTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTG 29232 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| || | || ||| | || ||||| | || | |||||| || ||| Sbjct 29231 GTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTTCCAGTC 29172 Query 64421 AAAGTTTTTACGAAAATTTGCAT 64443 || || ||||| || |||||||| Sbjct 29171 AAGGTCTTTACAAAGATTTGCAT 29149 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||| | || ||||| |||||||||||||| || | || |||||| | || Sbjct 29589 AAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATC 29530 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || || ||||| ||||| ||||||| | || || ||||| ||||||||||| || || Sbjct 29529 CTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTC 29470 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||| ||| || | || ||| | || ||||| | ||| | || Sbjct 29469 TTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGT 29410 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || ||||| || |||||||| Sbjct 29409 CTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 113 bits (124), Expect = 5e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || || |||||||||||||| || | || |||||| | || Sbjct 29132 AGTACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 29073 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || ||||| |||||| | ||||| || || || ||||| ||||||||||| || ||| Sbjct 29072 TCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCT 29013 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || |||||| || | || ||| | || || || | || | |||| Sbjct 29012 TGGATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTC 28953 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| ||||| || |||||||| Sbjct 28952 TTACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | || || | ||| | || || || |||||||||||||| || | Sbjct 29832 ACCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGA 29773 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || || ||||| |||||| | ||||| || || || ||||| || Sbjct 29772 AAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGG 29713 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| || | || ||| | | || || Sbjct 29712 GATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGAC 29653 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||| || | ||| ||||| || |||||||| Sbjct 29652 CTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq420 Length=40905 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || || |||||||| |||||||| || | || |||||| | || Sbjct 13334 AGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCC 13393 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||| |||||||| ||| | || || || ||||||||||| || |||||||| || ||| Sbjct 13394 TCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCT 13453 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || | || | |||| Sbjct 13454 TGGATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTC 13513 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | ||| || |||||||| |||||| Sbjct 13514 TTTCCAGTGAGAGTCTTGACGAAAATCTGCATT 13546 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| || | | ||||| | || || || ||| Sbjct 13799 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCGAGTTGC 13858 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | ||||| || || || ||||| || |||||||| || ||||| || || Sbjct 13859 TTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTG 13918 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||||||| || | || || | || || || | || | |||||| || ||| Sbjct 13919 GTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTTCCAGTC 13978 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 ||||| || |||||||| |||||| Sbjct 13979 AAAGTCTTGACGAAAATCTGCATT 14002 Score = 102 bits (112), Expect = 8e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || |||||||| |||||||| || | || |||||| | || || || ||| Sbjct 13571 TGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGC 13630 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||||||| | || || || || || ||||| ||||| || || || ||||| || || Sbjct 13631 TTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGAATCTTG 13690 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | |||||| | || || || | || | |||||||| || Sbjct 13691 GTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTGCCAGTG 13750 Query 64421 AAAGTTTTTACGAAAATTTGCATT 64444 | ||| || |||||||| |||||| Sbjct 13751 AGAGTCTTGACGAAAATCTGCATT 13774 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || || || |||||||||||||| || | | ||| || |||| || || ||| Sbjct 14027 TGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCTAGTTGC 14086 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || ||| | ||||| | || || ||||| || |||||||| || ||||| || || Sbjct 14087 TTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTG 14146 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| || || | || || | | || || || | || | ||||||||| ||| Sbjct 14147 GTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTTGCCAGTC 14206 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAATAAT 64452 || || || || || ||||||||| | || || Sbjct 14207 AATGTCTTGACAAAGATTTGCATTATGATTAT 14238 >seq2393 Length=1004 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || | ||||| || ||||| |||||||||||||| || | | ||||| ||||| Sbjct 887 AGTACCAAATGAAGTGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTGCGACCGTCT 946 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 || || ||||| ||||| ||||||| | || |||||||| || |||||||| || Sbjct 947 TCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGGTCGGGTGGGATTCCTTCCTT 1002 >seq456 Length=67341 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| ||||||||||| | | ||| || |||| || | ||||| ||| Sbjct 21386 GTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCAATTGCTTTCCG 21445 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||| ||||| || ||||| || || ||||| || || ||| Sbjct 21446 GCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTG 21505 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || ||| | || || || | || | |||||| || || ||||| Sbjct 21506 ACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTTCCTGTTAAAGTC 21565 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 21566 TTAACAAAGATCTGCATGTT 21585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499557330932200