Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010495.1 Length=45051 Score E Sequences producing significant alignments: (Bits) Value seq400 172 2e-38 seq833 107 6e-19 seq1320 87.8 5e-13 >seq400 Length=38681 Score = 172 bits (190), Expect = 2e-38 Identities = 201/269 (75%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 6642 TGACGCACAGCAAAGGATTGATGCTGCGCGCCATGATGCTGTTAATGCTGCTGCTAAGTC 6701 ||| || ||||| ||||| || |||||| |||||||| || ||||||| ||| | Sbjct 33304 TGAAGCGCAGCAGAGGATCGACCAGGCGCGCAATGATGCTCTTGATGCTGCCGCTCGCGC 33363 Query 6702 TGGCAGGTTGCAACAGCAACTCGCAAACATCCGCAAGCAGCTC-GTCGGATATTCCACCG 6760 |||| ||||||| || || |||| |||||| |||||||| | | | ||| | || Sbjct 33364 TGGCCGGTTGCAGCAACAGCTCGTTGCCATCCGTGAGCAGCTCAGGCAG-TATAACGCCA 33422 Query 6761 CTGAGTCCATTGGCAATCCAGCCGCAGAAACCGGAGTTTTGCTTGGAGACGTGCTCAGCA 6820 || || ||| |||||||||| |||||||||||||||| ||||||||||||| Sbjct 33423 CTATCGGCACTGGGGCGTCAGCCGCAGACACCGGAGTTTTGCTTGCCGACGTGCTCAGCA 33482 Query 6821 AATCTGTCGAAAGAAATCGACAACTGGCAGATTACGCTGACAGGGCAAGAGAGGCGGGAT 6880 ||||| |||| |||| |||||||||||||| ||||||||| |||| || || ||| Sbjct 33483 AATCTCTCGAGCGAAACCGACAACTGGCAGAGTACGCTGACCGGGCCGCCGAAGCCGGAC 33542 Query 6881 TAGCATGTGAGGCGCAGTACAATTCGCTG 6909 || ||||| ||||||| |||||||| Sbjct 33543 GAGTCTGTGAAAAGCAGTACGATTCGCTG 33571 Score = 87.8 bits (96), Expect = 5e-13 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 43192 GATATCAAAACCCCGGCCACTGATGCTTTCCTGGCTGAAGTGCGGGCGCATGGCGTGGAG 43251 |||||| |||||||||| || || |||||||||||||||||||||||||| || |||||| Sbjct 4066 GATATCGAAACCCCGGCGACAGACGCTTTCCTGGCTGAAGTGCGGGCGCAGGGTGTGGAG 4125 Query 43252 ATG 43254 ||| Sbjct 4126 ATG 4128 >seq833 Length=8904 Score = 107 bits (118), Expect = 6e-19 Identities = 182/264 (69%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 32907 CCACTTACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTC 32966 ||||| || || |||| | ||||| || || |||||||| ||||| || |||||||| Sbjct 8502 CCACTCTCGTGTTTGAAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTC 8443 Query 32967 TCCTGCAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTT 33026 || || | ||| || | ||| || || | | ||| || |||||||| || | ||| Sbjct 8442 ACCAGCGATTTCAGCGACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGAC 8383 Query 33027 CTTTTCTCCTGTTTGCTTGTCTTTCCACTGCTCAGATGTTGCAACAGAAAGGTTCGCAAT 33086 || | ||| ||||||||||| ||||||||||| |||||||| || || | | Sbjct 8382 TTTCTGTCCCGTTTGCTTGTCAGTCCACTGCTCACTTGTTGCAAGGCTGAGATTGGTTAC 8323 Query 33087 TGCAGAGCCTGATGCTGAATATTTAACTTCAGGGTCATTTCCGAGAGTGCCGACAATGAT 33146 |||| || | | | || | ||| || || | || ||||| || | ||| Sbjct 8322 TGCATTACCGTTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTGCCAACCAAGAT 8263 Query 33147 TACTTTATTTACGCCGCGTGCCAT 33170 ||||||||||||||||| ||||| Sbjct 8262 CACTTTATTTACGCCGCGAGCCAT 8239 >seq1320 Length=7270 Score = 87.8 bits (96), Expect = 5e-13 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32912 TACGAGTGCGAAGTTGTCCTTCTATATAAACCTGCGACCCTTTACGAAGATACTCTCCTG 32971 |||| |||||||| || ||||| || || ||||||| || || || ||||| || || | Sbjct 6234 TACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAGATATTCGCCAG 6175 Query 32972 CAACTTCCGCAATTTTTCCGAAGATAACAACTCGATGCCATTCAGTATGTTCTTTCTTTT 33031 | |||||||| | || ||||| | || || ||||||||||| || || || | | | Sbjct 6174 CCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTGCTCCCGCATCT 6115 Query 33032 CTCCTGTTTGCTTGTC 33047 | ||||| || ||||| Sbjct 6114 CCCCTGTCTGTTTGTC 6099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144017644531530