Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq582 156 6e-33 >seq582 Length=79996 Score = 156 bits (172), Expect = 6e-33 Identities = 478/721 (66%), Gaps = 40/721 (6%) Strand=Plus/Plus Query 41387 GGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAAGACGTG 41446 ||||| |||| |||||| |||||||||||| | ||| | ||| || ||| |||| Sbjct 74921 GGCACCTTGGGGGGCGGCAATCACTTCATTGAAATCTGCCTCGACGAGGAGCAGCGCGTG 74980 Query 41447 TGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGTCACTACATC 41506 ||| ||||||||||| || |||||||| | |||||| |||||| ||| ||| |||| Sbjct 74981 TGGGTCATGCTGCATTCGGGCTCGCGCGGCATCGGCAACGCCATCGGTCGTTACTTCATC 75040 Query 41507 GAGCGTGCGCAGAAGGA-GTGCGGCATGTGGCA-CAGCAGC--CTGCCGCACAACGATCT 41562 | ||||||||||| |||||| | || |||| || |||||| || || || Sbjct 75041 GCCGCCGCGCAGAAGGACATGCGGC----GCCACCAGCTGCAGCTGCCGGACGCGGACCT 75096 Query 41563 CGCGT-TCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATGCTGTGGG 41621 |||| ||| | || | | | ||| ||| | ||||||| | | || |||| Sbjct 75097 GGCGTATCTGAGC-GAAGGCTCCGCGGTGTTCGACGACTACGTGGAGGCGGTGGACTGGG 75155 Query 41622 CGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATCCAAGCGCT-G 41680 ||||||| | ||| | || || || | | |||| ||| |||| || | | ||| | Sbjct 75156 CGCAGGATTACGCGCTGCTCAACCGCGGCGAGATGATGCGCCGCGTGCTCGACGTGCTGG 75215 Query 41681 CGTCGTCATCTGCCGGCCTTCGAGCT-GACGGAAGAGGCGGTGAACTGCCACCACAACTA 41739 || || | |||| | ||| ||| ||||| || || | ||||||||||||||||| Sbjct 75216 CGAAGTTCGC-GCCGCCGTTCCGGCTCGACGG-GGAAGCCATCAACTGCCACCACAACTA 75273 Query 41740 TTGTGAGCAGGAGAACCACTTCGGGCGCAACG------TGTGGGTCACGCGCAAGGGTGC 41793 | || || | ||| |||||| | | || ||||||||||| || Sbjct 75274 CATCGCGCGCGAAACGCAC------GGCAACGATGATTTATATGTGACGCGCAAGGGCGC 75327 Query 41794 GGT-TCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGTCGT 41852 | ||| || || | | || ||||| ||||| || || |||||| || | Sbjct 75328 CATCTCG-GCGCGGCAGGGGGAGCTGGGCATCATCCCCGGCAGCATGGGCGCGCGCAGCT 75386 Query 41853 ACATCGTCAAGGGCAAGGGCAATCCGCATTCGTACTGCTCGTGCAGTCACGGGGCAGGAC 41912 |||||| ||||||||||| ||| | |||| |||||| ||| |||||||| || | Sbjct 75387 TCATCGTGCGTGGCAAGGGCAAGCCGGAATCGTTCTGCTCCTGCTCGCACGGGGCGGGGC 75446 Query 41913 GCCGTATGTCGCGCACCGAGGCCGTCAAG---CGATTC-ACCG--TCGAAGACCTCGTGC 41966 || | ||| |||| |||||| ||| || ||| |||| ||||| || | Sbjct 75447 GCAGCATGAGCCGCAGCGAGGC---GAAGCGCCGCTTCAACCGCTTCGAA---CTGGCCG 75500 Query 41967 AGCAGACGCAGGGTGTTGAATGCCCGAAGACCAAGGAAGTGCTGGATGAAATCCCGGCCG 42026 |||||||| || | || |||| ||| | ||| | || |||||||| |||| Sbjct 75501 AGCAGACGGCCGGCATCGAGTGCCGCAAGGATGGCGGCGTGATCGACGAAATCCCTGCCG 75560 Query 42027 CGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCATA 42086 | || || ||||||| ||| ||| |||| |||| ||||||||||| || |||| Sbjct 75561 CCTATAAAAACATCGACGCGGTCATGGCGCACCAGGGCGACCTGGTGGAAGTGGTGCATA 75620 Query 42087 C 42087 | Sbjct 75621 C 75621 Score = 107 bits (118), Expect = 3e-18 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 40958 ATCACCCGACTGCCCTTCATCCATCCGCACGGCGTCGCGTTGATGCCGGACGCGCACGCA 41017 ||| || | |||||| || | ||||||||| || || ||||| |||| ||| || Sbjct 74537 ATCGCCAGCCTGCCCATCGTTTATCCGCACGTGGTGGCC---ATGCCCGACGTGCATGCC 74593 Query 41018 GGCATCGGCAGCACGGTAGGATCGGTGATCGCTACGCAAGGTGCCATCATTCCGGCGGCG 41077 ||||||||| ||| || || ||||| | |||| || ||| |||| ||||| || Sbjct 74594 GGCATCGGCGCCACCGTCGGCAGCGTGATTCCCACGCGCGGCGCCGTCATCCCGGCCGCC 74653 Query 41078 GTGGGCGTGGACATCGGCTGCGGCATGGTGGCGGTTCGTACCAGTCTCAAGGCCAGTCAG 41137 |||||||| |||||||||||||||||| || || || || | | | |||| | || Sbjct 74654 GTGGGCGTCGACATCGGCTGCGGCATGAACGCCGTGCGCACGACCTTGACGGCCGGCGAG 74713 Query 41138 TTGCCGGACAACCT-GCGCG 41156 |||| |||||||| ||||| Sbjct 74714 CTGCCTGACAACCTGGCGCG 74733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739758473357000