Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq211 246 1e-60 seq7489 217 7e-52 seq1143 183 1e-41 seq4107 111 8e-20 seq1862 91.5 7e-14 seq1863 82.4 4e-11 >seq211 Length=76543 Score = 246 bits (272), Expect = 1e-60 Identities = 554/832 (67%), Gaps = 3/832 (0%) Strand=Plus/Plus Query 65917 CCACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGG 65976 |||| ||||| | | ||||||| ||| |||||||| || || || | ||||| Sbjct 35751 CCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 35810 Query 65977 TAGTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGG 66036 | || ||||||||||||||||| ||||| || || | || || ||| | | | | Sbjct 35811 TCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTG 35870 Query 66037 CCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 || | || || || || | || | || | | |||| ||||| || | || || | Sbjct 35871 CCCAGGCACAAAAAATGGGCGCCACCTGTGCGTTCGTCGATGCCGAGCACGCCCTGGATC 35930 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 |||| ||||||| ||| || || | || ||| | || ||||| ||| || |||| Sbjct 35931 CTGAATACGCCGGCAAGCTGGGCGTCAACGTTGACGACCTGCTGGTTTCGCAACCGGACA 35990 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | || ||||| || ||||| ||| ||| | || || || || | | | | Sbjct 35991 CCGGTGAGCAAGCGCTGGAAATCACCGACATGCTGGTGCGCTCCAACGCCATCGACGTGA 36050 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 |||| || ||||| ||||| |||||||| || ||| || ||||||| || || || | Sbjct 36051 TCGTGGTCGACTCCGTGGCAGCCCTGGTACCCAAGGCTGAAATCGAAGGCGAAATGGGCG 36110 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 || |||||| ||||| || |||||| ||||||| |||||| |||| || | ||||| | Sbjct 36111 ACATGCACGTGGGCCTTCAAGCCCGCTTGATGTCCCAGGCCCTGCGTAAAATCACCGGTA 36170 Query 66337 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 66396 || | | ||||| | | | | || ||| | || |||||||||| Sbjct 36171 ACATCAAGAACGCCAACTGCTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCG 36230 Query 66397 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 66456 || | | ||||| || ||||||||||||||||| || ||| |||||||| | Sbjct 36231 TGATGTTCGGCAGCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCTACGCTT 36287 Query 66457 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66516 |||| ||| |||| |||| | | | | | | ||||||||| || |||| ||| || | Sbjct 36288 CGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTTGGTA 36347 Query 66517 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 66576 | || ||||| || || || ||||||||| |||| || ||| ||| ||||| |||| Sbjct 36348 GCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCCGAGT 36407 Query 66577 TTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTT 66636 | || |||||||| |||| || | || | | || | ||||| ||| ||| Sbjct 36408 TCCAGATTCTCTACGGCAAGGGTATCTACCTGAACGGCGAGATGATCGACCTGGGCGTGC 36467 Query 66637 CCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCC 66696 | || || || |||| || || ||||||| ||| | || || ||||||| Sbjct 36468 TGCACGGTTTCGTCGAGAAATCCGGTGCCTGGTATGCCTACAACGGCAGCAAGATCGGCC 36527 Query 66697 AGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGC 66748 |||||||| |||| | | ||| || ||| |||||||| || ||||| Sbjct 36528 AGGGCAAGGCCAACTCGGCCAAGTTCCTTGCGGATAACCCGGATGTTGCCGC 36579 >seq7489 Length=570 Score = 217 bits (240), Expect = 7e-52 Identities = 387/564 (69%), Gaps = 23/564 (4%) Strand=Plus/Plus Query 66024 CTCCACGCGGTGGCCAATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAA 66083 || ||||| || |||||||| ||| ||| |||| ||| || | ||||||||| || Sbjct 11 CTGCACGCAGTTGCCAATGCTCAGGCCAACGGCGGCATCGCGGCGTTCATCGACGCGGAG 70 Query 66084 CATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTT 66143 || | ||||| || || || || || ||| || || ||| ||| ||| |||| Sbjct 71 CACGCACTCGATCCCGACTATGCAGCCAAGCTGGGCGTCGATACCGATGCACTCCTGGTC 130 Query 66144 GTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGC 66203 |||||| ||||| || ||||||||||| || ||| ||| | || || || ||| Sbjct 131 TCGCAGCCGGACACGGGTGAGCAGGCCCTCGAAATCACCGACATGCTGATCCGTTCAGGC 190 Query 66204 GAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAA 66263 | | |||| |||| | ||||| ||||| || || || || || || ||| ||||| Sbjct 191 GCCCTCGACATCGTCGTGATCGACTCCGTGGCCGCTCTTGTTCCTCGCGCCGAGATCGAA 250 Query 66264 GGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGC 66323 || || || || ||| |||||||| |||| || || |||||| ||||| ||||| Sbjct 251 GGCGAGATGGGTGACAGCCACGTCGGTTTGCAGGCTCGACTGATGAGCCAGGCGCTGCGC 310 Query 66324 AAGCTGACCGGCACGATTGCCAGCACCAACACGCTCAC------CCTGTGGGTGAATCAG 66377 ||| | ||||| ||||| | |||| || ||| | | | | || ||| Sbjct 311 AAGATCACCGG------TGCCATGAACAACTCGGGCACCACCGTCATCTTCATCAACCAG 364 Query 66378 CTGCGCGAGAAGATCGGCAACGTGGGCTACGG----CCCGAATGAGACCACCACCGGTGG 66433 || |||||||||||||| ||| | ||| |||||| |||||||||||||| Sbjct 365 CTTCGCGAGAAGATCGG---TGTGATGTTCGGTTCTCCCGAA----ACCACCACCGGTGG 417 Query 66434 TAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAA 66493 |||||| ||| |||||||| ||||| || | || |||| | |||| || || Sbjct 418 TAAGGCACTGAAGTTCTACGCTTCGGTCCGCCTCGACATCCGTCGTATCGAAACTCTCAA 477 Query 66494 GGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGC 66553 ||| || || || || || |||||||| ||||| ||||| |||||||||||| | || Sbjct 478 GGACGGTACCGACGCAGTGGGTAACCGCACTCGCGTCAAGGTCGTCAAGAACAAGGTCGC 537 Query 66554 GCCTCCGCACCGCCAGGCTGAGTT 66577 ||| ||| | ||||| ||||| Sbjct 538 GCCGCCGTTCAAGCAGGCCGAGTT 561 >seq1143 Length=31399 Score = 183 bits (202), Expect = 1e-41 Identities = 528/806 (66%), Gaps = 16/806 (2%) Strand=Plus/Plus Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978 ||||| ||| | | ||||| ||| || ||| | || || | ||| | ||||| || Sbjct 23731 ACCGGTTCGCTCGGCCTGGATATCGCGCTGGGCGTGGGCGGCTTGCCGCGCGGCCGCGTG 23790 Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 ||||| ||||||||||| || || || || || | || || ||| || | | || Sbjct 23791 GTGGAAATCTACGGTCCGGAATCGTCGGGTAAAACCACCCTGACCCTGCAAACCATTGCT 23850 Query 66039 --AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACC 66096 ||||| | | | || || | | ||||| ||||| ||||| || | |||||| Sbjct 23851 GAAATGCAAAAACTG--GGCGGTACCTGCGCCTTTATCGATGCCGAGCACGCGCTCGACG 23908 Query 66097 CTGAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACA 66156 | ||||| ||| || ||| | | | | | || || |||||| || | Sbjct 23909 TCGGCTACGCGCAAAAGCTGGGCGTGAACCTGCATGAATTGCTGATTTCGCAGCCGGATA 23968 Query 66157 CTGGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCA 66216 | ||||||||||| ||||| ||| ||| ||||| ||| ||| || | || Sbjct 23969 CGGGCGAGCAGGCGCTGGAAATCTGCGACGCCCTCGTGCGGTCGGGCAGCGTCGACCTCG 24028 Query 66217 TCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGG 66276 | || | ||||| ||||| || ||| ||| || || ||| ||||||| ||||| || | Sbjct 24029 TTGTCATCGACTCCGTGGCCGCACTGACGCCACGCGCCGAGATCGAAGGCGACATGGGTG 24088 Query 66277 ACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCA 66336 | || | |||||||| || ||||||||||| || || |||||||||||||||| Sbjct 24089 ATTCCCTGCCGGGCCTGCAAGCGCGCCTGATGTCGCAAGCGCTGCGCAAGCTGACCGGTT 24148 Query 66337 CGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGCA 66396 | || | |||| || || || | | | | || ||| | ||| |||||||||| Sbjct 24149 CCATCAACCGCACGAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCG 24208 Query 66397 ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCT 66456 || | | ||||| || ||||||||||| || || || ||| |||||||| | Sbjct 24209 TGATGTTCGGCAGCCCG---GAAACCACCACCGGCGGCAATGCCCTGAAATTCTACGCGT 24265 Query 66457 CGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCA 66516 | ||||| |||| ||||| | | || | | ||| |||||||| | |||||| Sbjct 24266 CCGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAGTCCGGCGATGAAGTGATCGGCA 24325 Query 66517 ACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGT 66576 || || || ||||| |||||||||||| | ||||| ||| | | || | | Sbjct 24326 ACGAAACCAAGGTCAAGGTCGTCAAGAACAAGATCGCGCCACCGTTCAAGGAAGCGCACT 24385 Query 66577 TTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTT 66636 | |||| | ||||||| |||| || ||||| | ||| |||| ||| ||| ||| Sbjct 24386 TCGACATCCTGTACGGCGCCGGCACGTCGCGCGAAGGCGAAATCCTGGACCTGG--GTT- 24442 Query 66637 CCCGAGG----GCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATC 66692 | || | | || | |||| || || | |||| || ||| | | | |||| Sbjct 24443 -CGGACGCCAAGATCGTGGAGAAATCCGGTTCGTGGTACAGCTACAACGGCGAACGCATC 24501 Query 66693 GGCCAGGGCAAGCCCAA-GACCGTGC 66717 |||||||||||| ||| | |||||| Sbjct 24502 GGCCAGGGCAAGGACAACGCCCGTGC 24527 >seq4107 Length=847 Score = 111 bits (122), Expect = 8e-20 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 66386 GAAGATCGGCAACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCG 66445 |||||||||| ||| | ||| || ||| ||||| || || || || || ||| Sbjct 2 GAAGATCGGC---GTGATGTTCGGTTCGCCTGAAACCACGACGGGCGGCAATGCGCTGAA 58 Query 66446 CTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGA 66505 ||||| || ||||||||| | ||| ||||| | |||| | ||||||| | || || Sbjct 59 ATTCTATGCTTCGGTGCGTCTCGATATCCGCCGCATCGGTGCGCTGAAGGAACGTGACGA 118 Query 66506 GGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCG 66565 || |||||||||| || ||||| ||||| |||||||||||||| ||||| || | Sbjct 119 GGTGGTCGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGCTTGCGCCCCCCTTCAA 178 Query 66566 CCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCC 66605 |||| || || |||| | || ||||| ||| ||||| Sbjct 179 GCAGGTCGAATTCGACATCATGTATGGCGAAGGCGTTTCC 218 >seq1862 Length=5913 Score = 91.5 bits (100), Expect = 7e-14 Identities = 134/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 59417 GACGGCGACGCCACATTCCTCCGCTGCACCATCTGGCGCGACGCCGCCGAGAACGTAGCG 59476 |||||||| || ||| | || |||| |||||||||||| || ||||||||||| ||| Sbjct 5330 GACGGCGATGCGCTGTTCATGCGTTGCAACATCTGGCGCGAAGCAGCCGAGAACGTCGCG 5389 Query 59477 GAAAGCCT--CCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCT 59534 || ||| | || | || || || |||||| ||| ||||||||||| || | Sbjct 5390 GAGAGCTTGACCCG--TGGTTCACGAGTAATCGTGAGCGGCCGGCTCAAGCAGCGTTCGT 5447 Query 59535 TCGAGACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCC 59594 ||| || || ||||| ||||| || ||| ||||| | || || || || ||||| | Sbjct 5448 ACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGTCGAGCTCGAAGTCGATGAAATCGGTC 5507 Query 59595 CGTCGCTG 59602 | || ||| Sbjct 5508 CTTCACTG 5515 >seq1863 Length=4856 Score = 82.4 bits (90), Expect = 4e-11 Identities = 142/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 50157 CAACCACCCCAGGACCTAGCCGCCGAGTCAG-CAGTCCTCGGCGCCATGCTTCTCTCCAA 50215 || ||||| |||||| | | |||||| ||| | || ||||||| |||||| || ||| Sbjct 3709 CAGCCACCTCAGGACATGACTGCCGAG-CAGTCGGTGCTCGGCGGCATGCTGCTGAGCAA 3651 Query 50216 GAACGCCACCCCGGCCGTCATGGAGATTCTCAAGCCCGAGGACTTCTACCGCCCCAACCA 50275 | |||||| | | | |||| | ||| | || || | ||||||||||| ||| || Sbjct 3650 GGACGCCATCGCTGACGTCCTCGAGGTACTGCGTCCGGGTGACTTCTACCGGCCCGCTCA 3591 Query 50276 CGCCACCGTCTACCAGATCATCACCGACCTCTACATGGCC--GGTGAGTCCGCCGACGTC 50333 | |||||||| | | ||| |||||||||| ||| || ||| |||||||| Sbjct 3590 CCAGTCCGTCTACGACGTGATCCTGGACCTCTACA--GCCGTGGCGAGCCCGCCGACCCG 3533 Query 50334 ATCACCGTCGCCGCGGAGCTCG 50355 | || ||| |||| ||||||| Sbjct 3532 GTGACGGTCTCCGCCGAGCTCG 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242429013712460