Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011166.1 Length=66530 Score E Sequences producing significant alignments: (Bits) Value seq60 87.8 8e-13 >seq60 Length=244765 Score = 87.8 bits (96), Expect = 8e-13 Identities = 133/187 (71%), Gaps = 3/187 (2%) Strand=Plus/Plus Query 5752 CCAACCAGCACCAGAGACTCGAAATCGAATCGATGATCGTGGATGGCCGAGTGATTGAAG 5811 || |||| ||| | ||| ||| | ||| || ||||||||||| || ||| | ||| Sbjct 233521 CCCACCAAGACCCGCGACATGAAGTTGAAGCGGTGATCGTGGATCGCGGAGCTTTCAAAG 233580 Query 5812 CAAAGCCGACGCGGCAGCTCCGGGTGCCAAACATGGAGGCGACCG--GCC-GGAAGTTGG 5868 || || ||||| | ||| |||||||| ||||| ||||| | ||| || ||| Sbjct 233581 CAGGCGCGGCGCGGTAACTCAGGGTGCCAGACATGCAGGCGCTGGTTGCCTTCCAGCTGG 233640 Query 5869 ACCTGAATGAACCCCAGGCCGTGCAGAGTGATCTTGTCCTTCATCGGGTCATGGACGGTG 5928 ||||| | || |||||||||||||| ||||||||||| |||| ||| | | | || Sbjct 233641 ACCTGCACAAAGCCCAGGCCGTGCAGGGTGATCTTGTCGGTCATTACGTCGTCTATGATG 233700 Query 5929 CTCATGG 5935 |||| || Sbjct 233701 CTCACGG 233707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 212734882948255