Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq404 257 2e-63 seq98 136 4e-27 >seq404 Length=78127 Score = 257 bits (284), Expect = 2e-63 Identities = 510/751 (68%), Gaps = 7/751 (1%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 |||||||| ||||| || ||| |||| ||| |||||| ||||| ||||| ||||| Sbjct 49716 GCCACCCCAACCCTCTTTAACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCTTCCTT 49657 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || |||| ||||| ||| || || | ||| | ||||||| | || || | Sbjct 49656 GTCCAGATGAAGGATGACTCGATCGATGGTATCTACGATACCCTCAAGCAATGCGCCCTC 49597 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || || || || ||||||| | | || || |||| Sbjct 49596 ATCTCCAAGTCGGCCGGAGGCATTGGTCTCGCTGTCCACAAGATCCGCGCTGCCCGTTCA 49537 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || |||||||| ||||| || || |||||||| ||||| || ||||| || || |||||| Sbjct 49536 TATATCCGCGGCACCAACGGTACATCCAACGGTCTCGTTCCCATGCTTCGCGTGTTCAAC 49477 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| ||||| || ||||| | | | ||||| | || || |||| Sbjct 49476 GACACTGCTCGCTACGTCGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTTTGCCATCTAC 49417 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| || || || ||| | ||||| || ||||||||||| || Sbjct 49416 CTCGAGCCATGGCACGCCGATGTCATGGAGTTCCTTGACCTTCGCAAGAACCACGGAAAG 49357 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | | ||| | |||||||| ||||| |||||||| | || || |||||| | Sbjct 49356 GAAGAGATGCGTGCCCGTGACCTCTTTTACGCCCTCTGGGTATCCGATCTCTTTATGGAG 49297 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || |||||| ||| ||| |||| || ||||||||||| || || || || | Sbjct 49296 CGTGTCGAGGCCAACGCCGAGTGGACACTCTTTTGTCCCAACGAGGCCCCAGGTCTCGCT 49237 Query 94372 GACGTTTGTGGA-TCGCGTTTTGAAGACTTGTATGCTCGTTACGA----ATCGCAGGGCA 94426 || || ||| || ||| | | | || | || ||||| | | |||| | Sbjct 49236 GATTGCTGGGGAGACGAGTTCCG-CGCTCTCTACACCCGCTACGAGGCCACCCCAGGTCT 49178 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | | ||| || | || | || ||| || | || ||| | | Sbjct 49177 CGGTC-GCAAGACCATCAAGGCCCAAGATCTCTGGTTCTCCATTATCGAGTCGCAGATTG 49119 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 |||| || || || || ||| | | ||||||| | ||| |||||||| ||||| ||| Sbjct 49118 AGACTGGCACCCCATATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAAACCAACAGA 49059 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | ||||| ||| || |||| || || ||||| ||||||||| | || || ||||| | Sbjct 49058 ATCTCGGCACCATCCAGTGCTCCAACCTCTGCACAGAGATTGTCCAATACACCTCTCCCG 48999 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCAT 94637 |||| | || ||||| ||||| | ||| || Sbjct 48998 ACGAAGTGGCCGTGTGCAACCTCGCCTCGAT 48968 >seq98 Length=772300 Score = 136 bits (150), Expect = 4e-27 Identities = 404/623 (65%), Gaps = 0/623 (0%) Strand=Plus/Minus Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 || ||| || ||| || || || || | || |||| || | ||||||| ||| || Sbjct 409208 ATTTCACAAAGCGCAGGTGGTATTGGTTTAAGCATCCATAACATCCGTGCCACGGGATCT 409149 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 || || | || || || || ||| ||| || | || |||||| | || || ||| Sbjct 409148 TATATTGGTGGAACAAACGGGACCAGCAATGGGATTGTACCTATGTTGAAAGTATTTAAC 409089 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 | | || || || |||||||||||||| || | | || ||| |||| || | || Sbjct 409088 GATACCGCCCGTTATGTGGACCAGGGTGGAGGTAAACGTAAAGGTGCTTTTGCCATTTAC 409029 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| ||||| || || |||| | ||| | |||||||| || ||||| || || Sbjct 409028 CTGGAGCCATGGCATGCAGATGTGCTGAGTTTTCTGGACCTGCGTAAAAACCATGGTAAA 408969 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | |||||||| | ||||| || || ||||| ||||| || |||| | Sbjct 408968 GAAGAACTTCGTGCCAGAGATTTATTCTATGCCCTTTGGGTATGTGACCTGTTCATGAGA 408909 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 | || || ||||| | ||||||| | || ||||| ||||| || |||||| | Sbjct 408908 AGGGTAGAAGAAAACGGAGACTGGAGTTTATTCTGTCCTCATGAAGCCCCGGGACTGGCA 408849 Query 94372 GACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCC 94431 || | ||| | || || | || |||| ||||||||| | || ||| Sbjct 408848 GATTGCTTTGGTGCAGAATTCGATGCTTTATATGAGCGTTACGAAAAAGAAGGACGTGCC 408789 Query 94432 AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACG 94491 | || || | || |||| ||| | || |||| |||| | || || Sbjct 408788 CGTAAAACCATTAAAGCACAAGAGCTTTGGTTTGCCATTCTGGATTCACAGATTGAAACC 408729 Query 94492 GGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTC 94551 || || || || | |||| || || | | ||| ||| ||||||||||| | | Sbjct 408728 GGAACCCCTTATCTGTTGTATAAAGATGCAGCAAACAGCAAATCCAACCAGCAAAATTTA 408669 Query 94552 GGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAG 94611 || ||||| || || || || || || || ||| | ||||||||||| |||||| Sbjct 408668 GGAACCATCAAAAGTTCCAACCTTTGTACAGAAATTATAGAGTATACTTCCAAAGACGAG 408609 Query 94612 ATTGCTGTGTGTAACCTGGGCTC 94634 ||||||| |||||||||| ||| Sbjct 408608 GTTGCTGTATGTAACCTGGCCTC 408586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494636592519800