Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq9928 123 6e-24 seq523 91.5 4e-14 >seq9928 Length=455 Score = 123 bits (136), Expect = 6e-24 Identities = 278/410 (68%), Gaps = 16/410 (4%) Strand=Plus/Minus Query 4453 CAGCTCGACCTTGATCGCCTCCAGCATCATCTGCGCCTGGTCGCTGCTGTCCATCACGAT 4512 |||||||||||||| ||||||||||| || ||||||||| |||||||||||| | Sbjct 445 CAGCTCGACCTTGACGGCCTCCAGCATGGTCGCGGCCTGGTCGAAGCTGTCCATCACCAG 386 Query 4513 CGGGATGAATTTCTTCGCCTGGCGGATGATGCAAAGCAA--CGTAAAAACCTGCGTAACC 4570 ||| |||||| ||| || ||| || | ||| ||| || | ||||||| | Sbjct 385 CGGAATGAATCGCTTGCGCT--CGGTCACCACACACCAAAGCGTGAAGAGCTGCGTACCG 328 Query 4571 AACGTTGATTTCGCTTCGCCGCGCGGTGCCGAAAGATTGATGAGCT-TGCCTTGCTTTG- 4628 | || || ||||| || || || || ||||| | | |||||||| || || ||| Sbjct 327 AGGGTGGACTTCGCCTCACCACGTGGGGCCGAGATCTCGATGAGCTGCCCCGTGGGTTGA 268 Query 4629 -CGGCGATGCGCGGCGGCAGGTTGTCGAAGCACCAGTCGTGAAAAACGGATGATTCGACC 4687 || | | || || |||| | ||||| || ||||| || || | |||| ||| | Sbjct 267 TCGACCAGGC-CG--GGCACGGTGTCGTAGAACCAGCGATGGAACAGCGATGCCTCGCTC 211 Query 4688 GCGTTGCTGTAGTGCGGGAAGTAGGTCTGAAAGAAGAAGCGATAGTCGCCCGAGAACACG 4747 || |||||| ||||| ||||| || ||||||| |||||| | | | Sbjct 210 ---TTCACGTAGTGAGGGAAATAGGTGCGACAGAAGAACTCGTAGTCG---GTCTGCGCC 157 Query 4748 CGCATACGCCGCTCCAGGCGCGCGTCTTCGTCCACCGCGAATCCGTCGCACGCGGCATCG 4807 || |||| |||| ||||| | | ||| |||||| || ||||| |||| ||| Sbjct 156 CGGGTACGGCGCTGGTCACGCGCTGCGTGGTCGGTCGCGAAGCCATCGCATTCGGCCTCG 97 Query 4808 ATGAGGCGGCGCTGGTCGTCGGTGAATGCCATCAGCTCCTTCAGGAACTG 4857 | ||||||||||| ||||||| | || |||||||| |||||||| Sbjct 96 ACCAGGCGGCGCTGTTCGTCGGCATAGGCGCGCAGCTCCTCGAGGAACTG 47 >seq523 Length=83696 Score = 91.5 bits (100), Expect = 4e-14 Identities = 220/330 (67%), Gaps = 10/330 (3%) Strand=Plus/Plus Query 14670 GGAAAACATGTCGTTCGACGAGCGCCTGCAGGCGGCGAAGACCCTCATCGACGAGTGCAT 14729 ||||| ||| | |||||||| ||||| ||||| ||| | | | || ||||| ||| | Sbjct 54705 GGAAAGCATCGCTTTCGACGAACGCCTCCAGGCTGCGCGGGCATTGATTGACGAATGCCT 54764 Query 14730 CAACGAATGGGCG--CGCGGCAGCGATCCGAAGATCCAGGT---GCTGGTTCAGCAGGCG 14784 || ||| | || |||| || |||||| ||| |||||| | | || Sbjct 54765 GCGGGACTGGACCACCGGGGCA-CGCCCCGAAGT----GGTCACGCTGGTAAATGATGCC 54819 Query 14785 TTCGAGACGGACAAGGAAGGCAAGATCAACGTCGGCCGCGTACTTGCGCTGCGCCGCTTG 14844 ||| ||| ||| | ||||| | ||| | | |||||| || ||| ||||||| || Sbjct 54820 TTCCGGACTGACCAAAAAGGCGACATCCGCACAGCCCGCGTCCTGGCGTTGCGCCGTATG 54879 Query 14845 GAGATCACGGACGACAAGTGGCAACGCGCCATGCAGGCGATCGGCGAGTCGGTGCAGGTC 14904 || || || || || ||||| ||||||||||| || |||||||| | ||||| Sbjct 54880 GAAATTACCGATGAACGCTGGCAGCGCGCCATGCAAGCCATCGGCGACGCCTGCCAGGTG 54939 Query 14905 GTCGGCACGAAGACGTATATGCGCTTCTACGAGCGCGTCGAGGGCAGCGAACAATACACG 14964 || ||| | ||| | || || ||| | || |||| || | | | ||| || ||| | Sbjct 54940 GTTGGCTCCAAGTCCTACATCCGCGTGTATCAGCGTGTTGGTGATACCGACCAGTACGAG 54999 Query 14965 CCGATCAGCCTCGACTTCGCGTCGCTGTGA 14994 || |||||||| || | ||| | ||||| Sbjct 55000 CCCATCAGCCTTGATATTGCGGGGGTGTGA 55029 Score = 86.0 bits (94), Expect = 2e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 6824 GCTGTCGACGGCATGAACTGCGCCAAGCCTTCCGCACCTACCGGGCTCTTTGCGTTGGCC 6883 || ||||| ||||| | ||| ||||||||| |||||| ||||| || |||| | | Sbjct 59614 GCGGTCGAGGGCATCACCTGGCCCAAGCCTTGCGCACCGACCGGCGATTTCGCGTCGAAC 59555 Query 6884 CGCCAGCGGCTTTCCTGATGGATCTGTCCGGCGAACGTTGCGACCGGCGCTTCGAGCCCC 6943 ||||||||||||||| ||||||||| ||||||| || | | ||| || || | ||| Sbjct 59554 TTCCAGCGGCTTTCCTGGTGGATCTGTGCGGCGAAGGTGGACAACGGAGCATCCAAGCCC 59495 Query 6944 CA 6945 || Sbjct 59494 CA 59493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120290391252570