Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq3754 607 9e-169 seq1353 336 2e-87 >seq3754 Length=1683 Score = 607 bits (672), Expect = 9e-169 Identities = 527/653 (81%), Gaps = 6/653 (1%) Strand=Plus/Plus Query 155963 AGAAGGACGCGGAGGTGTGGAACCGGCTGACCAACAACTTCTGGCTGCCGGAGAAGATCC 156022 |||||||||| ||||| ||| | || || || ||||||||||||||| || ||| | | Sbjct 305 AGAAGGACGCCGAGGTATGGGATCGCCTCGTCAGCAACTTCTGGCTGCCCGAAAAGGTGC 364 Query 156023 CGGTGTCCAATGACGTCCAGTCGTGGCACCAGCTGACCGAGGAAGAGCGCCTGATCACCA 156082 |||| ||||| ||| ||| ||| ||| |||||||| | | |||| | | |||||| Sbjct 365 CGGTCTCCAACGACATCCCGTCCTGGGGAACGCTGACCGCGCAGGAGCAGCAGCTCACCA 424 Query 156083 TGCGGGTGTTCACCGGCCTGACGATGCTGGACACCATCCAGGGCACCGTCGGCGCGGTCT 156142 |||| || ||||| ||||||||| |||| |||||||||||||| || |||||||| ||| Sbjct 425 TGCGCGTCTTCACGGGCCTGACGCTGCTCGACACCATCCAGGGAACGGTCGGCGCCGTCA 484 Query 156143 CGCTCATCCCGGACGCCATCACCCCGCACGAGGAGGCGGTGTACACCAACATCGCGTTCA 156202 |||||||||||||| ||||| || ||||| || |||||||||||||||||||| |||| Sbjct 485 GCCTCATCCCGGACGCGATCACTCCCCACGAAGAAGCGGTGTACACCAACATCGCCTTCA 544 Query 156203 TGGAGAGCGTGCACGCACGCAGCTAC---TCGAACATCTTCTCGACGCTGTGCTCCACCA 156259 |||| |||||||| || ||| |||| ||||||||||||||||||||||| Sbjct 545 TGGAATCGGTGCACGCGAAGAGTTACAGCTCGA---TCTTCTCGACGCTGTGCTCCACCC 601 Query 156260 AGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAGAACGCCAACCTGCAGAAGAAGGCTG 156319 || ||||||| ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 602 CCGACATCGACGACGCGTTCCGCTGGTCGGAGGAGAACCCCAACCTGCAGCGCAAGGCGC 661 Query 156320 AGATCGTGCTCAGCTACTACAACGGTGACGACCCGCTCAAGCGCAAGGTCGCCTCCACGC 156379 ||||||| ||| |||||||||||| || |||||||||||||||||||| || |||| Sbjct 662 AGATCGTTCTCGACTACTACAACGGCGAGTCGCCGCTCAAGCGCAAGGTCGCATCGACGC 721 Query 156380 TGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTACCTGCCGATGTTCTGGTCGTCGCGAG 156439 | || ||| ||||||| |||||| |||||||| |||||||| || |||||| ||||||| Sbjct 722 TCCTCGAGAGCTTCCTCTTCTACTCCGGCTTCTCCCTGCCGACGTACTGGTCCTCGCGAG 781 Query 156440 GCAAGCTCACCAACACCGCCGACATGATCCGGCTCATCATCCGGGACGAGGCCGTGCACG 156499 |||||||||||||||||| ||| | ||||| ||||||||||| |||||||| ||||||| Sbjct 782 CCAAGCTCACCAACACCGCAGACCTCATCCGCCTCATCATCCGCGACGAGGCTGTGCACG 841 Query 156500 GCTACTACATCGGCTACAAGTTCCAGAAGGGCCTGGAGAAGGAGACCAAGGCCCGCCAGC 156559 | ||||||||||||||||||| |||||||||||| || || ||| ||||| | Sbjct 842 GGTACTACATCGGCTACAAGTACCAGAAGGGCCTCGAACAGCTCACCGAGGCCGAGCGTG 901 Query 156560 AGGAACTCAAGGACTACACCTATGAGCTGCTGTTCGAGCTGTTCGACAACGAG 156612 | || |||||| ||||||| | ||| |||| |||||||| | ||| |||||| Sbjct 902 AAGAGCTCAAGAACTACACGTTCGAGTTGCTCTTCGAGCTCTACGAGAACGAG 954 Score = 134 bits (148), Expect = 1e-26 Identities = 148/195 (76%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 156679 TACAACGGCAACAAGGCCCTGCAGAACCTGGGCTACGACGCGCTGTTCAGCCGCAG--CG 156736 ||||||| ||||||||| || | || || |||||||| | || ||| ||| || || Sbjct 1012 TACAACGCCAACAAGGCGCTCAACAATCTCGGCTACGAAGGCCTCTTC--CCGAAGGACG 1069 Query 156737 ACTGCGACGTCAACCCGGCCATCCTGAGCGCGCTGTCGCCCGGTGGAGACGAGAACCACG 156796 | |||||||| ||||| |||||| || || || || || |||||||| |||| Sbjct 1070 AGACGGACGTCAATCCGGCTATCCTGTCGGCACTTTCACCGAATGCGGACGAGAATCACG 1129 Query 156797 ACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGGCCAAGGGTGTGGTCACCGAAGACG 156856 |||||||||| || ||||| ||| | |||||||| | ||| | || ||||||||||| Sbjct 1130 ACTTCTTCTCCGGCTCGGGTAGCTCCTACGTCATCGGCAAAGCCGTCAACACCGAAGACG 1189 Query 156857 ACGACTGGGACTTCT 156871 ||||||||||||||| Sbjct 1190 ACGACTGGGACTTCT 1204 >seq1353 Length=16071 Score = 336 bits (372), Expect = 2e-87 Identities = 335/434 (77%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 152886 ATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGCG 152945 || |||||||| |||||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 11008 ATGTTCGAGAGGTTCACCGATCGCGCGCGGCGCGTTGTTGTCCTGGCTCAAGAAGAAGCC 11067 Query 152946 CGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGAG 153005 | ||||||||||| ||||||||||| ||||| | || ||||| || | |||||| Sbjct 11068 AGGATGCTCAACCACAACTACATCGGCACGGAGCACATCCTTCTCGGCCTCATTCACGAG 11127 Query 153006 GGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCGT 153065 ||||| || || || |||||| || || || || | | ||| ||| |||| || || Sbjct 11128 GGCGAAGGTGTCGCAGCCAAGTCGTTGGAGTCGTTGGGTATCTCCCTCGAGGGAGTCCGC 11187 Query 153066 GCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTTC 153125 | |||||||||||||||||||||| ||||||||||| || |||| |||||||| ||| Sbjct 11188 AGCCAGGTCGAGGAGATCATCGGCCAGGGCCAGCAGGCTCCGTCCGGTCACATCCCCTTC 11247 Query 153126 ACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCAC 153185 || ||| ||||| ||||| |||||| |||||||| |||||||||||||| ||| Sbjct 11248 ACACCGCGCGCCAAGAAAGTCCTCGAGCTGAGTCTGCGCGAAGCGCTGCAGCTCGGACAC 11307 Query 153186 AACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGGC 153245 ||||||||||| || ||||| ||||||| | || ||||| |||||||||||||| | Sbjct 11308 AACTACATCGGTACGGAGCACATCCTGCTCGGTCTCATCCGTGAGGGTGAGGGCGTAGCA 11367 Query 153246 TGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCAG 153305 |||||| ||||| |||| ||| || || || | | ||||||||| |||||||||| Sbjct 11368 GCCCAGGTTCTGGTCAAGCTCGGTGCCGATCTCAACCGCGTCCGCCAGCAGGTCATCCAG 11427 Query 153306 CTGCTGTCCGGGTA 153319 |||||||| || || Sbjct 11428 CTGCTGTCGGGCTA 11441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526506212367600