Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq593 125 7e-24 seq1623 113 4e-20 seq420 111 2e-19 seq48 100 3e-16 >seq593 Length=58250 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | ||| ||||| | | |||||||||||||||||||||||||| Sbjct 29831 CCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAA 29772 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||||||||| || |||| | |||| ||||| ||||| || || || Sbjct 29771 AGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29712 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||| ||| Sbjct 29711 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACC 29652 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| ||||| |||||||| || ||||| Sbjct 29651 TCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || || ||||||||||| || |||| | Sbjct 29114 GACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCA 29055 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| ||||| || || || || ||||| ||||| ||| || |||| Sbjct 29054 AAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGGATCTTGGTCTTTACG 28995 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||| ||||| | || | || |||||||| ||||| ||| Sbjct 28994 TTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTT 28935 Query 138601 ACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 28934 ACAAAGATTTGCAT 28921 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||||||||||||||| | || || ||||||||||| || |||| | Sbjct 29342 GATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCA 29283 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 |||| ||||| ||||| || || || || ||||| ||||| ||| | || || || Sbjct 29282 AAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTC-TTGAATCTTGGTCTTGAC 29224 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | |||||| | ||| || || | || | || || ||||||| || | Sbjct 29223 ATTG-TCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCT 29165 Query 138599 TTACAAAAATCTGCAT 138614 ||||||| || ||||| Sbjct 29164 TTACAAAGATTTGCAT 29149 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | || ||||||||||||||||||||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || |||| | || || | ||||| || || || Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || || ||| |||| || | |||||| | ||| | Sbjct 29483 ATTCCTTCCTTGTC-TTGAATCTTGGTCTTAACATTG-TCGATGGTGTCAGATCCCTCGA 29426 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| || || |||||||| || ||||| Sbjct 29425 CTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 >seq1623 Length=5066 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | ||||||||||| |||||||||||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||||| ||||| || |||| | |||| ||||| ||||| || || || Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | || | ||| || | ||| ||| Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACC 281 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || ||||||||||| ||||| ||||| || ||||| Sbjct 282 TCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq420 Length=40905 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| || || | | |||||||||||||||||||||||| Sbjct 13775 CCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAT 13834 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||||| || |||| | |||| ||||| ||||| || || || Sbjct 13835 AGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 13894 Query 138508 ATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || | ||| |||| || | |||||| | || || Sbjct 13895 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTG-TCGATGGTGTCTGATCCTTCGAC 13953 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||||| ||| || || ||||||||||| Sbjct 13954 CTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | ||||| ||||| ||||||||||| Sbjct 13319 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAG 13378 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| ||||| || || | | ||||||| || || ||||| || || Sbjct 13379 AGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGG 13438 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | ||||| | | |||||| | ||| || Sbjct 13439 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTGT-CGATGGTGTCTGATCCCTCAAC 13497 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| ||||| || || ||||||||||| Sbjct 13498 CTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||||||| | ||||| |||||| ||||| || || | | Sbjct 14036 GACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCA 14095 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||||| || || || || ||||| ||||| || | || || || | Sbjct 14096 AAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTC-TTGGATCTTGGTCTTGAC 14154 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | |||||| | ||| ||||| | || | || || ||||||| || | Sbjct 14155 GTTG-TCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCT 14213 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| || ||||| Sbjct 14214 TGACAAAGATTTGCAT 14229 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| ||||| ||||||||||| | || || ||||||||||| || |||| | Sbjct 13580 GACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCA 13639 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || || ||||| || || || ||||| || || || ||| | || || || | Sbjct 13640 AAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATC-TTGAATCTTGGTCTTGAC 13698 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||| ||||| | || | || || ||||| ||||| | Sbjct 13699 GTTG-TCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCT 13757 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 13758 TGACGAAAATCTGCAT 13773 >seq48 Length=44992 Score = 100 bits (110), Expect = 3e-16 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||| |||||| | ||| || |||||||||||| || |||| | Sbjct 22369 GACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCA 22310 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTTA- 138538 |||| ||||| || || || || || || || || ||||| ||| | || || |||| Sbjct 22309 AAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTC-TTGAATCTTGGTCTTTAC 22251 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||| ||||| | || | || || ||||||| || | Sbjct 22250 ATTG-TCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTTCCAGTCAATGTCT 22192 Query 138599 TTACAAAAATCTGCAT 138614 | ||||| |||||||| Sbjct 22191 TGACAAAGATCTGCAT 22176 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | ||| ||||| | | |||||||||||||||||||||||| | Sbjct 22630 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 22571 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||||| || || |||| | |||| || | ||||| || || || Sbjct 22570 AATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 22511 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || || | | || | |||||| | ||| || Sbjct 22510 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACT 22451 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| ||||| || || |||||||||||| Sbjct 22450 TCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||||||||||||||| | || || |||||||| || || || | Sbjct 22825 GACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCG 22766 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || ||||| ||||| || || || || ||||| ||||| ||| | || || || | Sbjct 22765 AAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCT-TGAATCTTGGTCTTGAC 22707 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | ||| || | ||| ||||| | || | || || ||||| ||||| | Sbjct 22706 GTTGT-CGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCT 22648 Query 138599 TTACAAAAATCTGCAT 138614 |||| ||||||||||| Sbjct 22647 TTACGAAAATCTGCAT 22632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/197 (71%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| | ||| || ||||||||||| || || | Sbjct 22141 GACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCG 22082 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || ||||| ||||| || || || || ||||| ||||| || | || || || | Sbjct 22081 AAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTC-TTGGATCTTGGTCTTGAC 22023 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 ||| || | ||| || | ||| ||||| | || | || || ||||||| || | Sbjct 22022 GTTG-TCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCT 21964 Query 138599 TTACAAAAATCTGCATG 138615 |||| ||||| |||||| Sbjct 21963 TTACGAAAATTTGCATG 21947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496175523063600